View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_low_41 (Length: 294)

Name: NF17795_low_41
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_low_41
NF17795_low_41
[»] chr2 (1 HSPs)
chr2 (14-294)||(34496810-34497090)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 34497090 - 34496810
Alignment:
Q  14 agggatggacttttgagattggtgaagtctctctctcctaaagtggtcacccttgtggagcaagaatcaaacacaaacacaacacctttcttcaacaggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34497090 agggatggacttttgagattggtgaagtctctctctcctaaagtggtcacccttgtggagcaagaatcaaacacaaacacaacacctttcttcaacaggt 34496991  T
Q  114 tcatagaaactctagactactacttggcaatcttcgagtccatcgatgtcaccctctcaagaaatagcaaggagaggattaatgtggagcaacattgttt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34496990 tcatagaaactctagactactacttggcaatcttcgagtccatcgatgtcaccctctcaagaaatagcaaggagaggattaatgtggagcaacattgttt 34496891  T
Q  214 ggctcgggatatcgtcaatgtcattgcgtgtgaaggaaaagaaagggtcgagcgacacgaactgtttggtaagtggaagtc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34496890 ggctcgggatatcgtcaatgtcattgcgtgtgaaggaaaagaaagggtcgagcgacacgaactgtttggtaagtggaagtc 34496810  T

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