View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_42 (Length: 293)
Name: NF17795_low_42
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 34648820 - 34648542
Alignment:
| Q |
1 |
ggtagaaaaagaagtggagacagacagcaagaaaatgaaccaccctcgtcgaggaggaatccgaacattacctttcattcttggtaagcttaattttacc |
100 |
Q |
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| T |
34648820 |
ggtagaaaaagaagtggagacagacagcaagaaaatgaaccaccctcgtcgaggaggaatccgaacattacctttcattcttggtaagcttaattttacc |
34648721 |
T |
|
| Q |
101 |
ttaatctctttatgttgaactaatttcttcatattcatttcccatgtcaatatttattttctattacttttccttcccgttctcattc----nnnnnnnn |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34648720 |
ttaatctctttatgttgaactaatttcttcatattcatttcccatgtcaatatttattttctattacttttccttcccgttctcattcattttttttttt |
34648621 |
T |
|
| Q |
197 |
ngttcatagctttaaaatatgagttcagacgatcagtgtccttgtgaacnnnnnnnattaaaactaaaaggaagtattt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
34648620 |
tgttcatagctttaaaatatgagttcagacgatcagtgtccttgtgaactttttttattaaaaataaaaggaagtattt |
34648542 |
T |
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