View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_43 (Length: 292)
Name: NF17795_low_43
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 8139379 - 8139116
Alignment:
| Q |
1 |
ccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaacacagattcatcattc |
100 |
Q |
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| T |
8139379 |
ccaaaaacagtgatattcaagcatgcattcagtaacaaagactaaa---------aaaaaaaatcaacagatgcgcttcaaaaacacagattcatcattc |
8139289 |
T |
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| Q |
101 |
atggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaaga |
200 |
Q |
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| T |
8139288 |
atagaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaaga |
8139189 |
T |
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| Q |
201 |
aacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacatcattcc |
273 |
Q |
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| T |
8139188 |
aacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacataattcc |
8139116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 7502967 - 7503107
Alignment:
| Q |
84 |
acacagattcatcattcatggaaatgatcat--gattgcagaaataaatgatcaagatttttaaataaatgagaa---agatttttacataaatgattaa |
178 |
Q |
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| T |
7502967 |
acacagattcatcattcatagaagtgatcatatgattgcagaaataaatgatcaatatttttacataaatgattaatgatatttttacataaatgatcag |
7503066 |
T |
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| Q |
179 |
gatttatacttaatgatcaagaaacataaaaaactgagaca |
219 |
Q |
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| T |
7503067 |
gatttttacttaatgatcaagaaacataaaaaactgggaca |
7503107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 7499545 - 7499701
Alignment:
| Q |
1 |
ccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaacacagattcatcattc |
100 |
Q |
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| T |
7499545 |
ccaaaaacagtgatgttcaagcatgcattcagtaacaaagactcaa--------aaaaaaaaatcaacagatgagcttcaaaa-cacagattcatcattc |
7499635 |
T |
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| Q |
101 |
atggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttac |
166 |
Q |
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| T |
7499636 |
atagaagtgatcatgattgcagaaataaatgataaagatttttagataaatgattaagatttttac |
7499701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 7499658 - 7499735
Alignment:
| Q |
144 |
aaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagacatc |
221 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| |
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| T |
7499658 |
aaataaatgataaagatttttagataaatgattaagatttttacttcatgatctagaaacataaaaaactgagacatc |
7499735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7502888 - 7502928
Alignment:
| Q |
1 |
ccaaaaacagtgatattcaagcatgcattcagtaacaaaga |
41 |
Q |
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| T |
7502888 |
ccaaaaacagtgatatccaagcatgcaatcagtaacaaaga |
7502928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 7503119 - 7503160
Alignment:
| Q |
85 |
cacagattcatcattcatggaaatgatcatgattgcagaaat |
126 |
Q |
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| T |
7503119 |
cacaaattcatcattcatagaagtgatcatgattgcagaaat |
7503160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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