View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_48 (Length: 284)
Name: NF17795_low_48
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 31714040 - 31713825
Alignment:
| Q |
16 |
taaatttcagaacagcggtggtggagaagatggagcggtggtgttcggtggtggagaagatgttcgatggcgctttcgttcactgagaaaacaaatttat |
115 |
Q |
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| T |
31714040 |
taaatttcagaacagcggtggtggagaagatggagcggtggtgttcgttggtggagaagatgttcgatggcgctttcgttcactgagaaaacaaatttat |
31713941 |
T |
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| Q |
116 |
gaaatttgagaaaacaatttacagggtggattctagggtgagggctttaacaagt-cctcacccgtgggccactcaatttcaccgttagattaaaagcaa |
214 |
Q |
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| T |
31713940 |
gaaatttgagaaaacaatttacagggtggattctagggtgagggttctaacaagtccctcacccgtggaccactcaatttcaccgttagattaaaagcaa |
31713841 |
T |
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| Q |
215 |
tccacctgatctaatt |
230 |
Q |
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| T |
31713840 |
cccacctgatctaatt |
31713825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 4879577 - 4879487
Alignment:
| Q |
140 |
ggtggattctagggtgagggctttaacaagtcc-tcacccgtgggccactcaatttcaccgttagattaaaagcaatccacctgatctaatt |
230 |
Q |
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| T |
4879577 |
ggtggattctagggtgaggt-tctaacaagtccctcacccgtggaccattcaatttcaccgttagattaaaagcaacctacctgatctaatt |
4879487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 25725824 - 25725766
Alignment:
| Q |
171 |
cctcacccgtgggccactcaatttcaccgttagattaaaagcaatccacctgatctaatt |
230 |
Q |
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| T |
25725824 |
cctcaccggtggaccattcaatttcgccgttagattaaaagcaa-ccaccttatctaatt |
25725766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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