View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_low_53 (Length: 252)

Name: NF17795_low_53
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_low_53
NF17795_low_53
[»] chr5 (4 HSPs)
chr5 (13-235)||(12716313-12716535)
chr5 (13-235)||(12777544-12777766)
chr5 (117-204)||(38944927-38945013)
chr5 (123-225)||(30303212-30303314)
[»] chr3 (1 HSPs)
chr3 (123-231)||(26391972-26392080)
[»] chr4 (2 HSPs)
chr4 (26-225)||(43990824-43991024)
chr4 (37-105)||(19317464-19317533)
[»] chr8 (1 HSPs)
chr8 (26-143)||(18479658-18479776)
[»] chr2 (1 HSPs)
chr2 (123-225)||(28591618-28591720)
[»] chr1 (2 HSPs)
chr1 (187-225)||(27876045-27876083)
chr1 (123-213)||(39285229-39285319)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 12716313 - 12716535
Alignment:
Q  13 ctcttgtcgagaagccaacatgtccccaccagaaaacattcatcatttttctatatcatcaattaatttattcggtaaaagatagatgctcatcacatat 112  Q
    ||||| ||| |||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  12716313 ctcttttcgtgaagtcaccatgtccccaccagaaaacattaatcatttttctacatcatcaattaatttattcggtgaaagatagatactcatcacatat 12716412  T
Q  113 gagggaataaattggagtaccgatttgatcatgaattctcttccggctttggatagacactttcttctccaagaattaattgtgtgccaaatacgatcct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  12716413 gagggaataaattggagtaccgatttgatcatgaattctcttccggctttggatagacacttgcttctccagaaattaattgtgtgccaaatacgatcct 12716512  T
Q  213 tcataaagccaaacgtagcccct 235  Q
    |||||||||||||||||||||||    
T  12716513 tcataaagccaaacgtagcccct 12716535  T

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Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 12777544 - 12777766
Alignment:
Q  13 ctcttgtcgagaagccaacatgtccccaccagaaaacattcatcatttttctatatcatcaattaatttattcggtaaaagatagatgctcatcacatat 112  Q
    ||||| ||| |||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  12777544 ctcttttcgtgaagtcaccatgtccccaccagaaaacattaatcatttttctacatcatcaattaatttattcggtgaaagatagatactcatcacatat 12777643  T
Q  113 gagggaataaattggagtaccgatttgatcatgaattctcttccggctttggatagacactttcttctccaagaattaattgtgtgccaaatacgatcct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  12777644 gagggaataaattggagtaccgatttgatcatgaattctcttccggctttggatagacacttgcttctccagaaattaattgtgtgccaaatacgatcct 12777743  T
Q  213 tcataaagccaaacgtagcccct 235  Q
    |||||||||||||||||||||||    
T  12777744 tcataaagccaaacgtagcccct 12777766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 38945013 - 38944927
Alignment:
Q  117 gaataaattggagtaccgatttgatcatgaattctcttccggctttggatagacactttcttctccaagaattaattgtgtgccaaat 204  Q
    ||||| |||| ||||||||||| ||||  | ||||||||||||||| || || ||||| || ||||||||||| ||| ||||||||||    
T  38945013 gaatagattgaagtaccgatttaatcaacacttctcttccggctttagagaggcacttgctgctccaagaatt-attttgtgccaaat 38944927  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 30303314 - 30303212
Alignment:
Q  123 attggagtaccgatttgatcatgaattctcttccggctttggatagacactttcttctccaagaattaattgtgtgccaaatacgatccttcataaagcc 222  Q
    |||| ||||||||||||||||| |  ||||  || |||||||| | |||||| || ||||||   |||||| ||||||||||||| ||||| ||||| ||    
T  30303314 attgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaactgttaattttgtgccaaatacggtccttgataaaacc 30303215  T
Q  223 aaa 225  Q
    |||    
T  30303214 aaa 30303212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 26391972 - 26392080
Alignment:
Q  123 attggagtaccgatttgatcatgaattctcttccggctttggatagacactttcttctccaagaattaattgtgtgccaaatacgatccttcataaagcc 222  Q
    ||||||||| |||||||||||  | ||||||| ||||||| |||||||| || || ||||||||||||||| |||||||||| |||||||| ||||| ||    
T  26391972 attggagtatcgatttgatcaccatttctctttcggctttagatagacatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatcc 26392071  T
Q  223 aaacgtagc 231  Q
    ||| |||||    
T  26392072 aaaagtagc 26392080  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 43990824 - 43991024
Alignment:
Q  26 gccaacatgtccccaccagaaaacattcatcattttt-ctatatcatcaattaatttattcggtaaaagatagatgctcatcacatatgagggaataaat 124  Q
    |||| ||||||||||||||||| | || || |||||| ||||  |||||| ||| || || ||||||||||| |  ||||| | ||| || |||||| |     
T  43990824 gccaccatgtccccaccagaaagcgttaattattttttctatggcatcaactaacttgtttggtaaaagataaacactcataatataagaaggaatagac 43990923  T
Q  125 tggagtaccgatttgatcatgaattctcttccggctttggatagacactttcttctccaagaattaattgtgtgccaaatacgatccttcataaagccaa 224  Q
    |||||||||||||| ||||  | ||||||| ||||||| || || ||||| || |||||| | || ||| |||||||||| || ||||| || |||||||    
T  43990924 tggagtaccgatttcatcaacacttctctttcggctttagaaaggcacttgctgctccaacagtttattttgtgccaaatgcggtccttaatgaagccaa 43991023  T
Q  225 a 225  Q
    |    
T  43991024 a 43991024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 19317464 - 19317533
Alignment:
Q  37 cccaccagaaaacattcatcattttt-ctatatcatcaattaatttattcggtaaaagatagatgctcat 105  Q
    |||||||||||||||| ||||||||| | ||| | |||| ||||||||||||||||||||| ||||||||    
T  19317464 cccaccagaaaacattaatcattttttcgatagcgtcaactaatttattcggtaaaagataaatgctcat 19317533  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 18479776 - 18479658
Alignment:
Q  26 gccaacatgtccccaccagaaaacattcatcattttt-ctatatcatcaattaatttattcggtaaaagatagatgctcatcacatatgagggaataaat 124  Q
    |||| ||| ||||| ||||||| | || ||||||||| ||||  |||||| ||| || || ||||||||||| |  ||||| | ||| || |||||| ||    
T  18479776 gccaccatatccccgccagaaagcgttaatcattttttctatggcatcaactaacttgtttggtaaaagataaacactcataatataagaaggaatagat 18479677  T
Q  125 tggagtaccgatttgatca 143  Q
    |||||||||||||||||||    
T  18479676 tggagtaccgatttgatca 18479658  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 28591618 - 28591720
Alignment:
Q  123 attggagtaccgatttgatcatgaattctcttccggctttggatagacactttcttctccaagaattaattgtgtgccaaatacgatccttcataaagcc 222  Q
    |||| ||||||||||||||||| |  ||||  || |||||||| | |||||| || ||||||   |||||| ||||||||||||| ||||| ||||| ||    
T  28591618 attgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaactgttaattttgtgccaaatacggtccttgataaaacc 28591717  T
Q  223 aaa 225  Q
    |||    
T  28591718 aaa 28591720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 27876083 - 27876045
Alignment:
Q  187 attaattgtgtgccaaatacgatccttcataaagccaaa 225  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  27876083 attaattttgtgccaaatacgatcctttataaagccaaa 27876045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 39285319 - 39285229
Alignment:
Q  123 attggagtaccgatttgatcatgaattctcttccggctttggatagacactttcttctccaagaattaattgtgtgccaaatacgatcctt 213  Q
    |||||||||||||||| |||||||  |||||  |  ||||||||| |||||| || ||||||  ||||||| ||||||||||  |||||||    
T  39285319 attggagtaccgatttaatcatgacctctctgacaactttggataaacacttgctactccaactattaattttgtgccaaatgagatcctt 39285229  T

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