View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_57 (Length: 244)
Name: NF17795_low_57
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 36936388 - 36936286
Alignment:
| Q |
1 |
ttccaacaccctgtgttttgnnnnnnnataaagaaatctgttgttgtctaaattgggtaaattggagtgttggtggtaaaatttagattgattttgaaac |
100 |
Q |
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| T |
36936388 |
ttccaacaccctgtgttttgtttttttataaagaaatctgttgttgtctaaattgggtaaattggagtgttggtggtaaaatttagattgattttgaaac |
36936289 |
T |
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| Q |
101 |
aag |
103 |
Q |
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||| |
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| T |
36936288 |
aag |
36936286 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 36936262 - 36936163
Alignment:
| Q |
124 |
gcatctgaaataaagataatttcacccttagtttagtttgtatgactattctnnnnnnnttgatttgatctgatccaattcaatttaggctgtgtttggt |
223 |
Q |
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| T |
36936262 |
gcatctgaattaaagataatttcacacttagtttagtttgtatgactcttctaaaaaatttgatttgatctgatccaattcaatttaggcagtgtttggt |
36936163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 992757 - 992682
Alignment:
| Q |
28 |
ataaagaaatctgttgttgtctaaattgggtaaattggagtgttggtggtaaaatttagattgattttgaaacaag |
103 |
Q |
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|||||||||||| ||||||||||||||||| | | ||||||||||||||| ||||||||||||||| |||||||| |
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| T |
992757 |
ataaagaaatcttctgttgtctaaattgggttagtaggagtgttggtggtataatttagattgatttcgaaacaag |
992682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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