View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_59 (Length: 238)
Name: NF17795_low_59
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_59 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 54263070 - 54262832
Alignment:
| Q |
1 |
taccctccatgatgataaccttttctaattcctcgatcatgcgatgaagcaattccgcttaccgcttgaataactctcttctccacctaaaatcccacac |
100 |
Q |
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| T |
54263070 |
taccctccatgatgataaccttttctaattcctcaatcatgcgatgaagcaattccgcttaccgctagaataactctcttctccacctaaaatcccacac |
54262971 |
T |
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| Q |
101 |
ccggttcccaccaatttccctcttcaacaccatcaccttggcctctttgttcaaagataaggaaaatagttgatcagttctcatttttaatgacctcccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54262970 |
ccggttcccaccaatttccctcttcaacaccatcaccttagcctctttgttcaaagataaggaaaatagttgatcagttctcatttttaatgacctcccc |
54262871 |
T |
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| Q |
201 |
t-cccacccaatggtcactccaaaataaagtatcctctc |
238 |
Q |
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| T |
54262870 |
tccccacccaatggtcactccaaaataaagtatcctctc |
54262832 |
T |
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