View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_low_62 (Length: 235)

Name: NF17795_low_62
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_low_62
NF17795_low_62
[»] chr7 (15 HSPs)
chr7 (1-218)||(18522422-18522639)
chr7 (1-218)||(18632539-18632756)
chr7 (1-218)||(18645247-18645464)
chr7 (1-218)||(18647833-18648050)
chr7 (1-218)||(18652541-18652758)
chr7 (1-126)||(18591989-18592115)
chr7 (1-126)||(18619570-18619696)
chr7 (121-218)||(18599988-18600085)
chr7 (64-133)||(18522391-18522460)
chr7 (64-133)||(18591958-18592027)
chr7 (64-133)||(18619658-18619727)
chr7 (64-133)||(18632718-18632787)
chr7 (64-133)||(18645426-18645495)
chr7 (64-133)||(18648012-18648081)
chr7 (64-133)||(18652720-18652789)
[»] chr5 (3 HSPs)
chr5 (1-218)||(38573038-38573256)
chr5 (63-130)||(38573006-38573073)
chr5 (183-219)||(38580856-38580891)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 18522422 - 18522639
Alignment:
Q  1 aaaatttgaaagctaatgaaaatcacgatgtttaacggtaaaacaatattnnnnnnnttgaaacagataaaaatagttattcaatttcaaatgataaact 100  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||| |||||||||||||||||||||||    
T  18522422 aaaacttgaaaactaatgaaaatcacgatgtttaacggtaaaacaataataaaaaaattgaaacagataaaaatagctattcaatttcaaatgataaact 18522521  T
Q  101 tgaaaactaatgaagataaggatgtttaacggtctccagtttctgttttaagatgtgtggtgatgcagtttaataactacaaaaacaagctgttaatttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||    
T  18522522 tgaaaactaatgaagataaggatgtttaacggtctccagtttctgttttaaaatgtgtgatgatgcagtttaataattagaaaaacaagctgttaatttc 18522621  T
Q  201 tggtattattgttatacc 218  Q
    ||||||||||||||||||    
T  18522622 tggtattattgttatacc 18522639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 18632756 - 18632539
Alignment:
Q  1 aaaatttgaaagctaatgaaaatcacgatgtttaacggtaaaacaatattnnnnnnnttgaaacagataaaaatagttattcaatttcaaatgataaact 100  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||| |       ||||||||||||||||||| |||||||||||||||||||||||    
T  18632756 aaaacttgaaaactaatgaaaatcacgatgtttaacggtaaaacgataataaaaaaattgaaacagataaaaatagctattcaatttcaaatgataaact 18632657  T
Q  101 tgaaaactaatgaagataaggatgtttaacggtctccagtttctgttttaagatgtgtggtgatgcagtttaataactacaaaaacaagctgttaatttc 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  18632656 tgaaaactaatgaagataaggatgtttaacggtcttcagtttctgttttaaaatgtgttatgatgcagtttaataactacaaaaacaagttgttaatttc 18632557  T
Q  201 tggtattattgttatacc 218  Q
    ||||||||||||||||||    
T  18632556 tggtattattgttatacc 18632539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 18645464 - 18645247
Alignment:
Q  1 aaaatttgaaagctaatgaaaatcacgatgtttaacggtaaaacaatattnnnnnnnttgaaacagataaaaatagttattcaatttcaaatgataaact 100  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||| |       |||||||||||||||||||  ||||||||||||||||||||||    
T  18645464 aaaacttgaaaactaatgaaaatcacgatgtttaacggtaaaacgataataaaaaaattgaaacagataaaaatagccattcaatttcaaatgataaact 18645365  T
Q  101 tgaaaactaatgaagataaggatgtttaacggtctccagtttctgttttaagatgtgtggtgatgcagtttaataactacaaaaacaagctgttaatttc 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  18645364 tgaaaactaatgaagataaggatgtttaacggtcttcagtttctattttaaaatgtgttatgatgcagtttaataactacaaaaacaagttgttaatttc 18645265  T
Q  201 tggtattattgttatacc 218  Q
    ||||||||||||||||||    
T  18645264 tggtattattgttatacc 18645247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 18648050 - 18647833
Alignment:
Q  1 aaaatttgaaagctaatgaaaatcacgatgtttaacggtaaaacaatattnnnnnnnttgaaacagataaaaatagttattcaatttcaaatgataaact 100  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||| |       |||||||||||||||||||  ||||||||||||||||||||||    
T  18648050 aaaacttgaaaactaatgaaaatcacgatgtttaacggtaaaacgataataaaaaaattgaaacagataaaaatagccattcaatttcaaatgataaact 18647951  T
Q  101 tgaaaactaatgaagataaggatgtttaacggtctccagtttctgttttaagatgtgtggtgatgcagtttaataactacaaaaacaagctgttaatttc 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  18647950 tgaaaactaatgaagataaggatgtttaacggtcttcagtttctattttaaaatgtgttatgatgcagtttaataactacaaaaacaagttgttaatttc 18647851  T
Q  201 tggtattattgttatacc 218  Q
    ||||||||||||||||||    
T  18647850 tggtattattgttatacc 18647833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 18652758 - 18652541
Alignment:
Q  1 aaaatttgaaagctaatgaaaatcacgatgtttaacggtaaaacaatattnnnnnnnttgaaacagataaaaatagttattcaatttcaaatgataaact 100  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||  ||||||||||||||||||||||    
T  18652758 aaaacttgaaaactaatgaaaatcacgatgtttaacggtaaaacaataataaaaaaattgaaacagataaaaatagccattcaatttcaaatgataaact 18652659  T
Q  101 tgaaaactaatgaagataaggatgtttaacggtctccagtttctgttttaagatgtgtggtgatgcagtttaataactacaaaaacaagctgttaatttc 200  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  18652658 tgaaaactaatgaagataaggatgttgaacggtctttagtttctgttttaaaatgtgttatgatgcagtttaataactacaaaaacaagttgttaatttc 18652559  T
Q  201 tggtattattgttatacc 218  Q
    ||||||||||||||||||    
T  18652558 tggtattattgttatacc 18652541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 18591989 - 18592115
Alignment:
Q  1 aaaatttgaaagctaatgaaaatcacgatgtttaacggtaaaacaatattnnnnnnn-ttgaaacagataaaaatagttattcaatttcaaatgataaac 99  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||| ||||||||||||||||||||||    
T  18591989 aaaacttgaaaactaatgaaaatcacgatgtttaacggtaaaacaataataaaaaaaattgaaacagataaaaatagctattcaatttcaaatgataaac 18592088  T
Q  100 ttgaaaactaatgaagataaggatgtt 126  Q
    |||||||||||||||||||||||||||    
T  18592089 ttgaaaactaatgaagataaggatgtt 18592115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 18619696 - 18619570
Alignment:
Q  1 aaaatttgaaagctaatgaaaatcacgatgtttaacggtaaaacaatattnnnnnnn-ttgaaacagataaaaatagttattcaatttcaaatgataaac 99  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||| ||||||||||||||||||||||    
T  18619696 aaaacttgaaaactaatgaaaatcacgatgtttaacggtaaaacaataataaaaaaaattgaaacagataaaaatagctattcaatttcaaatgataaac 18619597  T
Q  100 ttgaaaactaatgaagataaggatgtt 126  Q
    |||||||||||||||||||||||||||    
T  18619596 ttgaaaactaatgaagataaggatgtt 18619570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 18599988 - 18600085
Alignment:
Q  121 gatgtttaacggtctccagtttctgttttaagatgtgtggtgatgcagtttaataactacaaaaacaagctgttaatttctggtattattgttatacc 218  Q
    ||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18599988 gatgtttaacggtcttcagtttctgttttaaaatgtgttatgatgcagtttaataactacaaaaacaagttgttaatttctggtattattgttatacc 18600085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 18522391 - 18522460
Alignment:
Q  64 cagataaaaatagttattcaatttcaaatgataaacttgaaaactaatgaagataaggatgtttaacggt 133  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  18522391 cagataaaaatagctattcaatttcaaatgaaaaacttgaaaactaatgaaaatcacgatgtttaacggt 18522460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 18591958 - 18592027
Alignment:
Q  64 cagataaaaatagttattcaatttcaaatgataaacttgaaaactaatgaagataaggatgtttaacggt 133  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  18591958 cagataaaaatagctattcaatttcaaatgaaaaacttgaaaactaatgaaaatcacgatgtttaacggt 18592027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 18619727 - 18619658
Alignment:
Q  64 cagataaaaatagttattcaatttcaaatgataaacttgaaaactaatgaagataaggatgtttaacggt 133  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  18619727 cagataaaaatagctattcaatttcaaatgaaaaacttgaaaactaatgaaaatcacgatgtttaacggt 18619658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 18632787 - 18632718
Alignment:
Q  64 cagataaaaatagttattcaatttcaaatgataaacttgaaaactaatgaagataaggatgtttaacggt 133  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  18632787 cagataaaaatagctattcaatttcaaatgaaaaacttgaaaactaatgaaaatcacgatgtttaacggt 18632718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 18645495 - 18645426
Alignment:
Q  64 cagataaaaatagttattcaatttcaaatgataaacttgaaaactaatgaagataaggatgtttaacggt 133  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  18645495 cagataaaaatagctattcaatttcaaatgaaaaacttgaaaactaatgaaaatcacgatgtttaacggt 18645426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 18648081 - 18648012
Alignment:
Q  64 cagataaaaatagttattcaatttcaaatgataaacttgaaaactaatgaagataaggatgtttaacggt 133  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  18648081 cagataaaaatagctattcaatttcaaatgaaaaacttgaaaactaatgaaaatcacgatgtttaacggt 18648012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 18652789 - 18652720
Alignment:
Q  64 cagataaaaatagttattcaatttcaaatgataaacttgaaaactaatgaagataaggatgtttaacggt 133  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  18652789 cagataaaaatagctattcaatttcaaatgaaaaacttgaaaactaatgaaaatcacgatgtttaacggt 18652720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 38573038 - 38573256
Alignment:
Q  1 aaaatttgaaagctaatgaaaatcacgatgtttaacggtaaaacaatattnnnnnnnttgaaacagataaaaatagttattcaatttcaaatgata-aac 99  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||||| |       ||||||||||||||||||| ||||||||||||||||||| |||    
T  38573038 aaaacttgaaaactaatgaaaatcacgatgtttaacagtaaaacaataataaaaaaattgaaacagataaaaatagctattcaatttcaaatgatataac 38573137  T
Q  100 ttgaaaactaatgaagataaggatgtttaacggtctccagtttctgttttaagatgtgtggtgatgcagtttaataactacaaaaacaagctgttaattt 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  38573138 ttgaaaactaatgaagataaggatgtttaacggtctctagtttctgttttaaaatgtgtgatgatgcagtttaataactacaaaaacaaactgttaattt 38573237  T
Q  200 ctggtattattgttatacc 218  Q
    |||||||||||||||||||    
T  38573238 ctggtattattgttatacc 38573256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 38573006 - 38573073
Alignment:
Q  63 acagataaaaatagttattcaatttcaaatgataaacttgaaaactaatgaagataaggatgtttaac 130  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||| || | ||||||||||    
T  38573006 acagataaaaatagctattcaatttcaaatgaaaaacttgaaaactaatgaaaatcacgatgtttaac 38573073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 38580856 - 38580891
Alignment:
Q  183 aaacaagctgttaatttctggtattattgttatacct 219  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38580856 aaacaagctgt-aatttctggtattattgttatacct 38580891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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