View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_63 (Length: 232)
Name: NF17795_low_63
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 34042799 - 34043004
Alignment:
| Q |
11 |
tagattattctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgat |
110 |
Q |
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| T |
34042799 |
tagattcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgat |
34042898 |
T |
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| Q |
111 |
tttttgttacattcagctctcgaggagtaatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattg |
210 |
Q |
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| T |
34042899 |
tttttgttacattcagctctcgaggagtgatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattg |
34042998 |
T |
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| Q |
211 |
aatctg |
216 |
Q |
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|||||| |
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| T |
34042999 |
aatctg |
34043004 |
T |
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Back To:
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Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 4046366 - 4046209
Alignment:
| Q |
59 |
ttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttat |
158 |
Q |
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|||| ||||||| |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
4046366 |
ttatcaatttgtagttgatttagtttctgaatcatatggttgctgtgctgattttttgttacattcagttctcgaggagtgatgatcctgattcatttat |
4046267 |
T |
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| Q |
159 |
tccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattgaatctg |
216 |
Q |
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| T |
4046266 |
tccgtaccttgtgatgaactatttcaatcttttcaaatcgcagcacaaattgaatctg |
4046209 |
T |
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