View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_64 (Length: 230)
Name: NF17795_low_64
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 42640061 - 42639863
Alignment:
| Q |
18 |
caagtttgcctaacaatgatgctaatgtggctgacatccttacacaagatttcttcaatcgtataattgatcaagctgattctagttgtgcaggaaagaa |
117 |
Q |
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| T |
42640061 |
caagtttgcctaacaatgatgctaatgtggctgacatccttacacaagatttcttcaatcgtataattgatcaagctgattctagttgtgcaggaaagaa |
42639962 |
T |
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| Q |
118 |
cttctacacaagagctgcttttctcgatgccctcaattcttataatcagtttggtaggtctggatccttggatgactccaaacgtgaggttgctgctgc |
216 |
Q |
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| T |
42639961 |
cttctacacaagagctgcttttctcgatgccctcaattcttataatcagtttggtaggtctggatctttggatgactccaaacgtgaggttgctgctgc |
42639863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 42635029 - 42634854
Alignment:
| Q |
26 |
cctaacaatgatgctaatgtggctgacatccttacacaagatttcttcaatcgtataattgatcaagctgattctagttgtgcaggaaagaacttctaca |
125 |
Q |
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|||| |||||||| || ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42635029 |
cctagcaatgatgtcaacgtggctgacattgttacacaagaattcttcaatagtataattgatcaagctgattctagttgtgcaggaaagaacttctatt |
42634930 |
T |
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| Q |
126 |
caagagctgcttttctcgatgccctcaattcttataatcagtttggtaggtctggatccttggatgactccaaacg |
201 |
Q |
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| T |
42634929 |
caagagctgtttttcttgatgccctcggttcttataatcagtttggtagggttggttctgtagatgactccaaacg |
42634854 |
T |
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