View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_68 (Length: 222)
Name: NF17795_low_68
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 34042811 - 34042600
Alignment:
| Q |
1 |
ggagaagaatctaacacaacggaacagattcaactcagcaaaatcaacgaaaacaaagcttcaaatcatgaatcgagcatgcaaatgacatgaattttct |
100 |
Q |
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| T |
34042811 |
ggagaagaatctaacacaacggaacagattcaactcagcaaaatcaacgaaaacaaagcttcaaatcatgaatcgagcatgcaaatggcatgaattttct |
34042712 |
T |
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| Q |
101 |
caatgaatcgatgatgaaattcaagaaaacgaagctcgaaatgatgactgaccttggcgattatagaaacagcaagattgcgaaaaagaatgtcatgagg |
200 |
Q |
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| T |
34042711 |
caatgaatcgatgatgaaattcaagaaaacgaagctcgaaatgatgactgaccttggcgattatagaaacagcaagattgcgaaaaagaatgtcatgagg |
34042612 |
T |
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| Q |
201 |
ggttgtgaaggt |
212 |
Q |
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|||||||||||| |
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| T |
34042611 |
ggttgtgaaggt |
34042600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 4046456 - 4046531
Alignment:
| Q |
120 |
ttcaagaaaacgaagctcgaaatgatgactgaccttggcgattatagaaacagcaagattgcgaaaaagaatgtca |
195 |
Q |
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||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
4046456 |
ttcaagaaaacaaagctcaaaatgatgactgaccttgacgattacagaaacagcaagattgcgaaaaagaatgtca |
4046531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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