View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_7 (Length: 547)
Name: NF17795_low_7
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Complemental strand, 41211855 - 41211336
Alignment:
| Q |
18 |
tttaccactccaatcctcaaaattataatttggtaaaatgtacacaggcatcatccaaattatttacaatctagaaatcaaagaggagcaactatatcat |
117 |
Q |
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| T |
41211855 |
tttaccactccaatcctcaaaattataatttggtaaaatgtacacaggcatcatccaaattatttacagtctagaaatcaaagaggagcaactatatcat |
41211756 |
T |
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| Q |
118 |
actatactatgttttcttataatctttcatgattcaattccacttaaatttttaagctataccaaatgctagcaatgatggacaaaaaattcatgtgtgc |
217 |
Q |
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| T |
41211755 |
actatactatgttttcttataatctttcatgattcaattccacttaaatttttaagctataccaaatgctagcaatgatggacaaaaaatt-atgtgtgc |
41211657 |
T |
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| Q |
218 |
aaccttccagtcaagtagtgagacaaactttctcttagtgccactcccttctcatcaacaccttcataaacaagttgatggtaacctgagtcatgattat |
317 |
Q |
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| T |
41211656 |
aaccttccagtcaagtagtgagacaaactttctcttagtgccactcccttctcatcaaaaccttcataaacaagttgatggtaacctgagtcatgattat |
41211557 |
T |
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| Q |
318 |
tacgatagaaacatagtaactcatcattcacttcatcttgcatgtcaataacaatgttgtgaagtatgcaacaaacaagaataatcctcggcagccgatg |
417 |
Q |
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| T |
41211556 |
tacgatagaaacatagtaactcatcattcacttcatcttgcatgtcaataacaatgttgtgaagtatgcaacaaacaagaataatcctcggcagccgatg |
41211457 |
T |
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| Q |
418 |
tttgtctggccgccacatttttccacgaatgattttccacatctccttaagccttgtcaatgctctttgtgccaccatcctagtttctaaatgcagctta |
517 |
Q |
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| T |
41211456 |
tttgtctggccgccacatttttccacgaatgattttccacatctccttaagccttgtcaatgctctttgtgccaccatcctagtttctaaatgcagctta |
41211357 |
T |
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| Q |
518 |
ttaaacttagcctttgcttct |
538 |
Q |
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| T |
41211356 |
ttaaacttagcttttggttct |
41211336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 217 - 522
Target Start/End: Complemental strand, 41201608 - 41201303
Alignment:
| Q |
217 |
caaccttccagtcaagtagtgagacaaactttctcttagtgccactcccttctcatcaacaccttcataaacaagttgatggtaacctgagtcatgatta |
316 |
Q |
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| T |
41201608 |
caaccttccattcaagtagtgagacaaactttctcttagtgccactcccatctcatcaacaccttcacaaataagttgatggtacccagagtcatgatta |
41201509 |
T |
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| Q |
317 |
ttacgatagaaacatagtaactcatcattcacttcatcttgcatgtcaataacaatgttgtgaagtatgcaacaaacaagaataatcctcggcagccgat |
416 |
Q |
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| T |
41201508 |
ttatgatacaaatagagcaattcatccttcacttcatcttgcatatcaatgacaatgttgtgaagtaagcaacaaacaagaataatccttggcaaacgat |
41201409 |
T |
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| Q |
417 |
gtttgtctggccgccacatttttccacgaatgattttccacatctccttaagccttgtcaatgctctttgtgccaccatcctagtttctaaatgcagctt |
516 |
Q |
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| T |
41201408 |
gtttgtccggccgccacatatttccacgaatgattctccacatctccttaagccttgtcaatgctctttgtgccaccatccttgttgccaaatgcagctt |
41201309 |
T |
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| Q |
517 |
attaaa |
522 |
Q |
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||||| |
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| T |
41201308 |
gttaaa |
41201303 |
T |
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Back To:
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