View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_71 (Length: 211)
Name: NF17795_low_71
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 30394140 - 30394317
Alignment:
| Q |
9 |
gaagaatatgtgaaatcggaagaaagagatgaattgt-gagtggaatgaacatgcaagcaacatcaatatcttagagaacgtagatcttgaaaagcaaat |
107 |
Q |
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| T |
30394140 |
gaagaaaatgtgaaatcggaagaaagagatggattgttgagtggaatgaacatgcaagcaacatcaatatcttagagaacgtagatcttgaaaagcaaat |
30394239 |
T |
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| Q |
108 |
aaaaaatgttatatagaatgtcaagattaatatcgtttcttcaagcaatgtccttgttcatagcaaacaaaaagatcc |
185 |
Q |
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| T |
30394240 |
aaaaaatgttatatagaatgtcaagattaatatcgtttcttcaagcaatgtccttgttcatagcaaacaaaaggatcc |
30394317 |
T |
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