View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_8 (Length: 539)
Name: NF17795_low_8
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 45977448 - 45977960
Alignment:
| Q |
18 |
gtttctaaagtttttcctgtatccgaagaatcattacacgaatatccaaggcttagtgaagatgcagttgtgttacaagaaacttccagcaatgagatca |
117 |
Q |
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| T |
45977448 |
gtttctaaagtttttcctgtatccgaagaatcattacacgaatatccaaggcttagtgaagatgcagttgtgttacaagaaacttccagcaatgagatca |
45977547 |
T |
|
| Q |
118 |
tcgtaactgaaggttctgtggtaaagagtactttcaagcaatgtatacttagttcctcctgccaatcagaactgaaacaagtagacaatagaactgaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45977548 |
tcgtaactgaaggttctgtggtaaagagtactttcaagcaatgtatacttagttcctcctgccaatcagaactgaaacaagtagacaatagaattgaaaa |
45977647 |
T |
|
| Q |
218 |
ccaggactatttaccagctgggaatattccaagatatgtgaatcttgaaccatcactttcaatggactggcttgagatatcatggaatgatttacggatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45977648 |
ccaggactatttaccagctgggaatattccaagatatgtgaatcttgaaccatcactttcaatggactggcttgagatatcatggaatgatttacggatt |
45977747 |
T |
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| Q |
318 |
aaagagcgtgttggtgctggtaatttttctgcttcttgaattcacgtagatttggtataaaaacctgtttcctcatttggtgactctaaatgctcctgtc |
417 |
Q |
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| T |
45977748 |
aaagagcgtgttggtgctggtaatttttctgcttcttgaattcacgtagatttggtataaaaacctatttcctcatttggtgactctaaatgctcctgtc |
45977847 |
T |
|
| Q |
418 |
cttttaactatgtaggctcattcggaactgtgcaccatgctgagtggcatggatcagtaagtcataatttattcgtacagtaagcacattcgagtgtata |
517 |
Q |
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| T |
45977848 |
cttttatctatgtaggctcattcggaactgtgcaccatgctgagtggcatggatcagtaagtcataatttattcgtacagtaagcacattcgagtgtata |
45977947 |
T |
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| Q |
518 |
aacacaggttctg |
530 |
Q |
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| T |
45977948 |
aacacagtttctg |
45977960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 28050735 - 28050623
Alignment:
| Q |
234 |
gctgggaatattccaagatatgtgaatcttgaaccatcactttcaatggactggcttgagatatcatggaatgatttacggattaaagagcgtgttggtg |
333 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||||| ||||| || |||||| |
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| T |
28050735 |
gctggggatattccaaaatatgtgaatcttgaaccatcactagcaatggactggcttgagatatcatgggatgagctgcggatcaaagaacgcattggtg |
28050636 |
T |
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| Q |
334 |
ctggtaatttttc |
346 |
Q |
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| T |
28050635 |
ctggtaaattttc |
28050623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 236 - 353
Target Start/End: Original strand, 13207751 - 13207868
Alignment:
| Q |
236 |
tgggaatattccaagatatgtgaatcttgaaccatcactttcaatggactggcttgagatatcatggaatgatttacggattaaagagcgtgttggtgct |
335 |
Q |
| |
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|||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| | ||||| ||||| || |||||||| |
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| T |
13207751 |
tggggatattccaaaatatgtgaatcttgaaccgtcactagcaatggactggcttgagatatcatgggatgagctgcggatcaaagaacgcattggtgct |
13207850 |
T |
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| Q |
336 |
ggtaatttttctgcttct |
353 |
Q |
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| T |
13207851 |
ggtaaattttctgtttct |
13207868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 7984826 - 7984753
Alignment:
| Q |
234 |
gctgggaatattccaagatatgtgaatcttgaaccatcactttcaatggactggcttgagatatcatggaatga |
307 |
Q |
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| T |
7984826 |
gctggggatattccaaaatatgtgaatcttgaaccgtcactagcaatggactggcttgagatatcatgggatga |
7984753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 23479585 - 23479468
Alignment:
| Q |
236 |
tgggaatattccaagatatgtgaatcttgaaccatcactttcaatggactggcttgagatatcatggaatgatttacggattaaagagcgtgttggtgct |
335 |
Q |
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|||| ||||||||| ||||||||||||| || ||||| |||||||||||||||||||||||||| |||| | ||||| ||||| || |||||||| |
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| T |
23479585 |
tggggatattccaaaatatgtgaatcttaaattgtcactagcaatggactggcttgagatatcatgggatgaactgcggatcaaagaacgcattggtgct |
23479486 |
T |
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| Q |
336 |
ggtaatttttctgcttct |
353 |
Q |
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||||| ||||||| |||| |
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| T |
23479485 |
ggtaaattttctgtttct |
23479468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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