View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_high_16 (Length: 405)
Name: NF17796_high_16
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 18983262 - 18982888
Alignment:
| Q |
16 |
attcaatatttctccataatctccttcaagctaatacacaaaatcgatatattattactattatactgatacatcatattataaacaaataccgtgtttt |
115 |
Q |
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| T |
18983262 |
attcaatatttctcaataatctccttcaagctaatacacaaaatcgatatattattactattatacggatacatcatattataaataaataccgtgtttt |
18983163 |
T |
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| Q |
116 |
attataaattataatcattacaggctctctcaaagagaatccactatggtaaatttgttgctgaggcaaagtttcaagaatgtccttctgtatatgaggc |
215 |
Q |
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| T |
18983162 |
attataaattataatcattacaggctctctcaaagagaatccactatggtaaatttgttgctgaggcaaagtttcaagaatgtccttctgtatatgaggc |
18983063 |
T |
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| Q |
216 |
tgccattaaagcgaaagtaagcatttacctgccttataatatactacctccgtccttatattgcgaaactacaaaatttatcttgatatggcttatcatg |
315 |
Q |
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| T |
18983062 |
tgccattaaagcgaaagtaagcatttacctgccttataatatactacctccgtccttatattacgaaactacaaaatttatcttgatatggcttatcatg |
18982963 |
T |
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| Q |
316 |
attctcaggacaggaaacgactactggagttgctgacatatgaatcagtggaggaatcggtgcagaagagagtag |
390 |
Q |
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| T |
18982962 |
attctcaggacaggaaacggctactggagttgctgacatatgaatcagtggaggaatcggtgcagaagagagtag |
18982888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 4246214 - 4246157
Alignment:
| Q |
136 |
caggctctctcaaagagaatccactatggtaaatttgttgctgaggcaaagtttcaag |
193 |
Q |
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| T |
4246214 |
caggctctctcaaagagaatccattatggcaaatttgttgctgaggccaaatttcaag |
4246157 |
T |
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