View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17796_high_23 (Length: 343)
Name: NF17796_high_23
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 37715086 - 37715401
Alignment:
| Q |
16 |
gcatatatatataccatttgatcacaatttgaaaaagtttaaatcgctatgaaaatttagaaatgaaaaaatgcaatatccatctctaattatgtggcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37715086 |
gcatatatatataccatttgatcacaatttgaaaaagtttaaatcgctatgaaaatttagaaatgaaaaaatgcaatatccatctctaattatgtggcaa |
37715185 |
T |
|
| Q |
116 |
gtattagagacgaaaaatgtactaaccaatgttaaatttttcgtctctaatttttgtcaatatttcaactgtttttactttttagtagtgattgttactg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37715186 |
gtattagagacgaaaaatgtactaaccaatgttaaatttttcgtctctaatttttgtcgatatttcaactgtttttactttttagtagtgattgttactg |
37715285 |
T |
|
| Q |
216 |
aagtcattcaattcaat-tttttcaaagaaaagtccgacttttttcttcatttattccaacagaaaattnnnnnnntaaatttct--agatacgactaat |
312 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
37715286 |
aagtcattcaattcaatctttttcaaagaaaagtccgacttttttcttcatttattccaacagaaaattaaaaaaataaatttctagagatacgactaat |
37715385 |
T |
|
| Q |
313 |
taaaaatcaacctttg |
328 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37715386 |
taaaaatcaacctttg |
37715401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University