View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17796_high_26 (Length: 303)

Name: NF17796_high_26
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17796_high_26
NF17796_high_26
[»] chr5 (1 HSPs)
chr5 (16-286)||(41075739-41076009)
[»] chr3 (1 HSPs)
chr3 (211-267)||(50191123-50191178)
[»] chr1 (1 HSPs)
chr1 (27-68)||(4131938-4131979)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 41076009 - 41075739
Alignment:
Q  16 atggctcctctcactcttcatgagattcaactgtataaacataaaaagttcaagaaaaagataagacagacataaaaggtgttagaacatattacataat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41076009 atggctcctctcactcttcatgagattcaactgtataaacataaaaagttcaagaaaaagataagacagacataaaaggtgttagaacatattacataat 41075910  T
Q  116 gtgatacaaacgaacgattaaagcatattattatacaatttaagcacatgtcttatattatatgagtcatgaatggcacaccctgcaattcacagcattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41075909 gtgatacaaacgaacgattaaagcatattattatacaatttaagcacatgtcttatattatatgagtcatgaatggcacaccctgcaattcacagcattt 41075810  T
Q  216 gctagggcatttgtaagattttctttgttaacaaaaagtacaggaaaataaatttgaacgggtgacacttg 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41075809 gctagggcatttgtaagattttctttgttaacaaaaagtacaggaaaataaatttgaacgggtgacacttg 41075739  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 50191123 - 50191178
Alignment:
Q  211 catttgctagggcatttgtaagattttctttgttaacaaaaagtacaggaaaataaa 267  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  50191123 catttgct-gggcatttgtaagattctctttgttaaccaaaagtacagaaaaataaa 50191178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 4131938 - 4131979
Alignment:
Q  27 cactcttcatgagattcaactgtataaacataaaaagttcaa 68  Q
    ||||||||||| |||||| ||||||||||||||||| |||||    
T  4131938 cactcttcatgcgattcatctgtataaacataaaaaattcaa 4131979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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