View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_high_27 (Length: 284)
Name: NF17796_high_27
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 2776201 - 2775944
Alignment:
| Q |
10 |
attattctttgttagactcctcaacatggtacagagtcatggcatccgacataaagactttgcatttgcattaaaaagattgtcctcttcattctttctt |
109 |
Q |
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| T |
2776201 |
attattctttgttagactcctcaacatggtacagagtcatggcatccgacataaagactttgcatttgcattaaaaagattgtcctcttcattctttctt |
2776102 |
T |
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| Q |
110 |
tgatcaacatattagagataggggctcactgaagttcaacactagccaaagaatgaggtctaaattaaaaaagtttcgatcccaaaggtaatccaatagc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2776101 |
tgatcaacatattagagataggggctcactgaagttcaacactagccaaataatgaggtctaaattaaaaaagtttcgatcccaaaggtaatccaatagc |
2776002 |
T |
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| Q |
210 |
tttttccaagttcnnnnnnngagaaaaatgcaataacaaaacacatgaagagaggtct |
267 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
2776001 |
tttttccaagttctttttttgagaaaaatgcaataacaaaacacatgatgagaggtct |
2775944 |
T |
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