View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_high_35 (Length: 241)
Name: NF17796_high_35
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 1644919 - 1645133
Alignment:
| Q |
18 |
ctccaaactcacaaacaaagtctnnnnnnnctgacatcatagtattttctttaaatagactaagagtatgcaaaaacataattatgaatatatgatattt |
117 |
Q |
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| T |
1644919 |
ctccaaactcacaaacaaagtttaaagaaactgacatcatagtattttctttaaatagaccaagaatatgcaaaaacttgattatgaatatatgatatt- |
1645017 |
T |
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| Q |
118 |
caaatttgtttggtattctagataattaacaatcatttacaacgaaaggagattctttcaagtcttgatctctcatattttctcaatttgagagatctat |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1645018 |
caaatatgtttggtattctagataattaacaatcatttacaacgaaaggagattctttcaagtgttgatctctcatattttctcaatttgagagatctat |
1645117 |
T |
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| Q |
218 |
acccttaaattcattt |
233 |
Q |
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|||||||||||||||| |
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| T |
1645118 |
acccttaaattcattt |
1645133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 3170145 - 3169962
Alignment:
| Q |
50 |
gacatcatagtattttctttaaatagactaagagtatgcaaaaacataattatgaatatatgatatttcaaatttgtttggtattctagataattaacaa |
149 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
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| T |
3170145 |
gacatcatagtattttctttaaatagactaagagtatccaaaaacatgattatgaatatatgatatttcaaatatgtatggtattctagattattaacaa |
3170046 |
T |
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| Q |
150 |
tcatttacaacgaaaggagattctttcaagtcttgatctctcatattttctcaatttgagagatctatacccttaaattcattt |
233 |
Q |
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| T |
3170045 |
tcatttacgacgaaaggagattcattcaagtcttgatctctcatattttctcaatttgagagatctatacccttaaattcattt |
3169962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 7287713 - 7287778
Alignment:
| Q |
168 |
gattctttcaagtcttgatctctcatattttctcaatttgagagatctatacccttaaattcattt |
233 |
Q |
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|||||| ||||||||| ||||| || ||||||||||| |||||| ||||||||||||| ||||| |
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| T |
7287713 |
gattctctcaagtcttattctctaatgttttctcaattggagagacatatacccttaaatccattt |
7287778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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