View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17796_high_37 (Length: 237)

Name: NF17796_high_37
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17796_high_37
NF17796_high_37
[»] scaffold0129 (1 HSPs)
scaffold0129 (114-221)||(38169-38276)
[»] chr8 (8 HSPs)
chr8 (114-221)||(32741318-32741425)
chr8 (114-221)||(35217425-35217532)
chr8 (114-221)||(42989961-42990068)
chr8 (114-221)||(9312661-9312768)
chr8 (114-221)||(23716339-23716446)
chr8 (114-221)||(38224181-38224288)
chr8 (114-221)||(16727291-16727398)
chr8 (114-221)||(44501595-44501702)
[»] chr7 (6 HSPs)
chr7 (114-221)||(336537-336644)
chr7 (114-221)||(3523681-3523788)
chr7 (114-221)||(10268307-10268414)
chr7 (114-221)||(32592103-32592210)
chr7 (114-221)||(25519468-25519575)
chr7 (114-178)||(11806013-11806077)
[»] chr5 (7 HSPs)
chr5 (114-221)||(3616298-3616405)
chr5 (114-221)||(43489082-43489189)
chr5 (114-221)||(2027458-2027565)
chr5 (114-221)||(23416675-23416782)
chr5 (114-221)||(37037875-37037982)
chr5 (114-221)||(37827674-37827781)
chr5 (12-110)||(38954600-38954698)
[»] chr4 (12 HSPs)
chr4 (114-221)||(1084692-1084799)
chr4 (114-221)||(14678089-14678196)
chr4 (114-221)||(17195032-17195139)
chr4 (114-221)||(45107908-45108015)
chr4 (114-221)||(5926858-5926965)
chr4 (114-221)||(21398248-21398355)
chr4 (114-220)||(49545771-49545877)
chr4 (114-221)||(27182156-27182264)
chr4 (153-221)||(10486463-10486531)
chr4 (114-208)||(54072263-54072357)
chr4 (114-178)||(15056005-15056069)
chr4 (114-158)||(10489439-10489483)
[»] chr3 (3 HSPs)
chr3 (114-221)||(44552400-44552507)
chr3 (114-221)||(34946537-34946644)
chr3 (114-221)||(38517262-38517369)
[»] chr2 (5 HSPs)
chr2 (114-221)||(3535908-3536015)
chr2 (114-221)||(12533970-12534077)
chr2 (114-221)||(7355616-7355723)
chr2 (114-221)||(2273594-2273701)
chr2 (114-178)||(43380264-43380328)
[»] chr1 (5 HSPs)
chr1 (114-221)||(16640924-16641031)
chr1 (114-221)||(22146814-22146921)
chr1 (114-221)||(41774922-41775029)
chr1 (114-221)||(8363421-8363529)
chr1 (114-178)||(29650608-29650672)
[»] chr6 (3 HSPs)
chr6 (114-221)||(30703205-30703312)
chr6 (114-221)||(14219982-14220089)
chr6 (114-178)||(5309439-5309503)


Alignment Details
Target: scaffold0129 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 38169 - 38276
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38169 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 38268  T
Q  214 ttcattag 221  Q
    ||||||||    
T  38269 ttcattag 38276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 32741318 - 32741425
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32741318 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 32741417  T
Q  214 ttcattag 221  Q
    ||||||||    
T  32741418 ttcattag 32741425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 35217532 - 35217425
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35217532 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 35217433  T
Q  214 ttcattag 221  Q
    ||||||||    
T  35217432 ttcattag 35217425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 42990068 - 42989961
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42990068 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 42989969  T
Q  214 ttcattag 221  Q
    ||||||||    
T  42989968 ttcattag 42989961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 9312661 - 9312768
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9312661 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtatgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 9312760  T
Q  214 ttcattag 221  Q
    ||||||||    
T  9312761 ttcattag 9312768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 23716339 - 23716446
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23716339 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctaggtag 23716438  T
Q  214 ttcattag 221  Q
    ||||||||    
T  23716439 ttcattag 23716446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 38224288 - 38224181
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38224288 atcatctttgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 38224189  T
Q  214 ttcattag 221  Q
    ||||||||    
T  38224188 ttcattag 38224181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 16727291 - 16727398
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16727291 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtatgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacatgggtag 16727390  T
Q  214 ttcattag 221  Q
    ||||||||    
T  16727391 ttcattag 16727398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 44501595 - 44501702
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44501595 atcatcttcgtcgtcatcctttgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctaggtag 44501694  T
Q  214 ttcattag 221  Q
    ||||||||    
T  44501695 ttcattag 44501702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 336644 - 336537
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  336644 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 336545  T
Q  214 ttcattag 221  Q
    ||||||||    
T  336544 ttcattag 336537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 3523788 - 3523681
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523788 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 3523689  T
Q  214 ttcattag 221  Q
    ||||||||    
T  3523688 ttcattag 3523681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 10268307 - 10268414
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10268307 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 10268406  T
Q  214 ttcattag 221  Q
    ||||||||    
T  10268407 ttcattag 10268414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 32592210 - 32592103
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32592210 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 32592111  T
Q  214 ttcattag 221  Q
    ||||||||    
T  32592110 ttcattag 32592103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 25519575 - 25519468
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25519575 atcatctttgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 25519476  T
Q  214 ttcattag 221  Q
    ||||||||    
T  25519475 ttcattag 25519468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 11806077 - 11806013
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 178  Q
    |||||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  11806077 atcatcttcgccgtaatcctctgcattgttctcaatgatagtattcacaatatcttctaaactct 11806013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 3616405 - 3616298
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3616405 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 3616306  T
Q  214 ttcattag 221  Q
    ||||||||    
T  3616305 ttcattag 3616298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 43489189 - 43489082
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489189 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 43489090  T
Q  214 ttcattag 221  Q
    ||||||||    
T  43489089 ttcattag 43489082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 2027565 - 2027458
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2027565 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccaaacatgcttcattttcacctgggtag 2027466  T
Q  214 ttcattag 221  Q
    ||||||||    
T  2027465 ttcattag 2027458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 23416782 - 23416675
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23416782 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctaaacctccgaacatgcttcattttcacctgggtag 23416683  T
Q  214 ttcattag 221  Q
    ||||||||    
T  23416682 ttcattag 23416675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 37037875 - 37037982
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37037875 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcatctgggtag 37037974  T
Q  214 ttcattag 221  Q
    ||||||||    
T  37037975 ttcattag 37037982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 37827674 - 37827781
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  37827674 atcatcttcatcgtcatcctctgcattgttctcaatgatagtacgcacaatatattctaaactctgaacctccgaacatgcttcatttgcacctgggtag 37827773  T
Q  214 ttcattag 221  Q
    ||||||||    
T  37827774 ttcattag 37827781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 38954698 - 38954600
Alignment:
Q  12 cagagagagacatcatttggatgggtcctttaatagtgagtgcaggggaatgagttgtcgagttacggatggtaatattagagacaagaccggaacctc 110  Q
    |||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38954698 cagagagagacatcattttgatgggtccttcaatagttagtgcaggggaatgagatgtcgagttacggatggtaatattagagacaagaccggaacctc 38954600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 1084692 - 1084799
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1084692 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 1084791  T
Q  214 ttcattag 221  Q
    ||||||||    
T  1084792 ttcattag 1084799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 14678196 - 14678089
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14678196 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 14678097  T
Q  214 ttcattag 221  Q
    ||||||||    
T  14678096 ttcattag 14678089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 17195032 - 17195139
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17195032 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 17195131  T
Q  214 ttcattag 221  Q
    ||||||||    
T  17195132 ttcattag 17195139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 45108015 - 45107908
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45108015 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 45107916  T
Q  214 ttcattag 221  Q
    ||||||||    
T  45107915 ttcattag 45107908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 5926965 - 5926858
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5926965 atcatcttcgttgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 5926866  T
Q  214 ttcattag 221  Q
    ||||||||    
T  5926865 ttcattag 5926858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 21398355 - 21398248
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21398355 atcatcttcgtcatcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 21398256  T
Q  214 ttcattag 221  Q
    ||||||||    
T  21398255 ttcattag 21398248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 49545771 - 49545877
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49545771 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctaaacctccgaacatgcttcattttcacctgggtag 49545870  T
Q  214 ttcatta 220  Q
    |||||||    
T  49545871 ttcatta 49545877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 27182156 - 27182264
Alignment:
Q  114 atcatcttcgt-cgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggta 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27182156 atcatcttcgttcgtcatcctctgcattgttctcaatgatagtacacacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggta 27182255  T
Q  213 gttcattag 221  Q
    |||||||||    
T  27182256 gttcattag 27182264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 10486531 - 10486463
Alignment:
Q  153 agtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtagttcattag 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10486531 agtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctaggtagttcattag 10486463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 54072357 - 54072263
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctg 208  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  54072357 atcatcttcgctgtcatcctctgcattgttctcaatgatagtacctacaatatcttttaaactctgaacctctgaacatagttcattttcacctg 54072263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 15056069 - 15056005
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 178  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  15056069 atcatctttgtcgtcatcctctgcattgttgtcaatgatagtacccacaatatcttctaaactct 15056005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 10489483 - 10489439
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacg 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10489483 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacg 10489439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 44552400 - 44552507
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44552400 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 44552499  T
Q  214 ttcattag 221  Q
    ||||||||    
T  44552500 ttcattag 44552507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 34946644 - 34946537
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34946644 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacatgggtag 34946545  T
Q  214 ttcattag 221  Q
    ||||||||    
T  34946544 ttcattag 34946537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 38517262 - 38517369
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38517262 atcatcttcgtcgtcattctctgcattattctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 38517361  T
Q  214 ttcattag 221  Q
    ||||||||    
T  38517362 ttcattag 38517369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 3536015 - 3535908
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3536015 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 3535916  T
Q  214 ttcattag 221  Q
    ||||||||    
T  3535915 ttcattag 3535908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 12534077 - 12533970
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12534077 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 12533978  T
Q  214 ttcattag 221  Q
    ||||||||    
T  12533977 ttcattag 12533970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 7355616 - 7355723
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7355616 atcatctttgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 7355715  T
Q  214 ttcattag 221  Q
    ||||||||    
T  7355716 ttcattag 7355723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 2273701 - 2273594
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2273701 atcatcttcgtcgccatcctctgcattgttctcaataatagtacgcacaatatcttataaactctgaacctccgaacatgcttcattttcacctgggtag 2273602  T
Q  214 ttcattag 221  Q
    ||||||||    
T  2273601 ttcattag 2273594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 43380264 - 43380328
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 178  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43380264 atcatcttcgtcgtaatcctctgcattgttctcaatgatagtacccacaatatcttctaaactct 43380328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 16640924 - 16641031
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16640924 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 16641023  T
Q  214 ttcattag 221  Q
    ||||||||    
T  16641024 ttcattag 16641031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 22146814 - 22146921
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22146814 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgtttcattttcacctgggtag 22146913  T
Q  214 ttcattag 221  Q
    ||||||||    
T  22146914 ttcattag 22146921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 41775029 - 41774922
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41775029 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctaggtag 41774930  T
Q  214 ttcattag 221  Q
    ||||||||    
T  41774929 ttcattag 41774922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 8363529 - 8363421
Alignment:
Q  114 atcatcttcgt-cgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggta 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8363529 atcatcttcgttcgtcatcctctgcattgttctcaatgatagtacacacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggta 8363430  T
Q  213 gttcattag 221  Q
    |||||||||    
T  8363429 gttcattag 8363421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 29650672 - 29650608
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650672 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 29650608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 30703205 - 30703312
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30703205 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactccgaacctccgaacatgcttcattttcacctgggtag 30703304  T
Q  214 ttcattag 221  Q
    ||||||||    
T  30703305 ttcattag 30703312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 14220089 - 14219982
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 213  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14220089 atcatcttcgtcgtcatcctctgctttgttctcaatgatagtacgtacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 14219990  T
Q  214 ttcattag 221  Q
    ||||||||    
T  14219989 ttcattag 14219982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 5309439 - 5309503
Alignment:
Q  114 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 178  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  5309439 atcatcttcgccgtaatcctctgcattgttctcaatgatagtacccataatatcttctaaactct 5309503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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