View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_high_4 (Length: 581)
Name: NF17796_high_4
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Complemental strand, 39374441 - 39373948
Alignment:
| Q |
17 |
ataataaagctctaggtaaatataaggaggggagtctttcatttgtagagtgttgtttccttgcaagaaaagattaagcaccgcaatacatgactagaga |
116 |
Q |
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| T |
39374441 |
ataataaagctctaggtaaatataaggaggggagtctttcatttgtagagtgttgtttccttgcaagaaaa---------------tacatgactagaga |
39374357 |
T |
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| Q |
117 |
tcattcacctacctagtgagtggagaacatgtattgctctctaaaaacacacacttagagcatatttggtcacttattaaattactaactttgaattttt |
216 |
Q |
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| T |
39374356 |
tcattcacctacctagtgagtggagaacatgtattgctatctaaaaacacacacttagagcatatttggtcacttattaaattactaactttgaattttt |
39374257 |
T |
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| Q |
217 |
catcaatgcacacgtcc-tacaataataataataat---tataagatgtaggatatgacatggatgcacgataaaaccctgaattgcatgtcctaaataa |
312 |
Q |
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| T |
39374256 |
catcaatgcacacgtccctacaataataataataataattataagatgtaggatatgacatggatgcacgataaaaccctgaattgcatgtcctaaataa |
39374157 |
T |
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| Q |
313 |
ttattggattaaatcttcttttttctatgaatattggatcatatccctactacatggccaacacgctgacatatattttcaaccatacggcttatagtaa |
412 |
Q |
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| T |
39374156 |
ttattggattaaatcttcttttttctatgaatattggatcatatctctactacatggccagctagctaacatatattttcaaccattcaacgtatagtaa |
39374057 |
T |
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| Q |
413 |
acaagcggttaatgactctat-tnnnnnnncaatcgtttagaagaatttgagtttaattattgagcaaaacaattccttaaataaaactccaaattacta |
511 |
Q |
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| T |
39374056 |
acaagcggttaatgactctatcaaaaaaaacaatcgtttagaagaatttgagtttgattattgagcaaaacaattccttaaataaaactccaaattacta |
39373957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 39382425 - 39382362
Alignment:
| Q |
260 |
gtaggatatgacatggatgcacgataaaaccctgaattgcatgtcctaaataattattggatta |
323 |
Q |
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| T |
39382425 |
gtaggatatgacatggatgcacgataacgacttgaattgcatgtcctaaccaattattggatta |
39382362 |
T |
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