View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_high_6 (Length: 499)
Name: NF17796_high_6
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Original strand, 11850988 - 11851451
Alignment:
| Q |
18 |
gttctctagggtttagataaaacgtgattattattcgattctaactataacaagatcattaacctagacaagaactactattgtttcaattgtggcaagt |
117 |
Q |
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| T |
11850988 |
gttctctagggtttagataaaacgtgattattattcgattctaactataacaagatcattaacctagacaagaactactattgtttcacttgtggcaagt |
11851087 |
T |
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| Q |
118 |
cgaacaaataatgaagagatttaatcaattctcatgaaaccaacttcttgaggagaagcacttaattttttgtgtcaagcacatagagattgtttcaaga |
217 |
Q |
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| T |
11851088 |
cgaacaaataatgaagagttttcatcaattctcatgaaaccaacttcttgaagagaagcacttaattttttgtgtcaagcacatagagattgtttcaaga |
11851187 |
T |
|
| Q |
218 |
tttagattgattgcaaaccaagaaagcatccgaactttgtagatttcatggagatgaattcatgtatacttctttaatacatgtaaaacatataactgta |
317 |
Q |
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| T |
11851188 |
tttagattgattgcaaaccaagaaagcttccgaactttgtagatttcatggagatgaattcatgtatacttctttaatacatgtaaaacatttaactgta |
11851287 |
T |
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| Q |
318 |
tgtctattagtgtaagaaattggtttgaagttcatgtctgatgtccatcatatatgcttaacataaatagctagtcatttccacgtttnnnnnnnttacc |
417 |
Q |
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| T |
11851288 |
tgtctattagtgtaagaaattggtttgaagttc-------atgtccatcatatatgcttaacataaatagctagtcatttcgacgtttaaaaaaattacc |
11851380 |
T |
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| Q |
418 |
ctttttcta-gaaaagttggtcccaaataatatcattgttccaaatatgatccatgaaaatatgatgagaa |
487 |
Q |
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| T |
11851381 |
ctttttctataaaaagttggtcccaaataatatcattgttccaaatatgatccatgaaaatatgatgagaa |
11851451 |
T |
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