View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_1 (Length: 753)
Name: NF17796_low_1
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 12 - 737
Target Start/End: Original strand, 27446047 - 27446770
Alignment:
| Q |
12 |
caaagggatgtctatttctcattaacaatacgcagatgacattctttgaataggtgaagcatcagtgcagaatcttggactatgaatgctcgttcgagag |
111 |
Q |
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| T |
27446047 |
caaagggatgtctatttctcattaacaatacgctgatgacattctttgaataggtgaagcatcagtgcagaatcttggactatgaatgctcgttcgagag |
27446146 |
T |
|
| Q |
112 |
gttttgagatggtgtccgacttcaaagttattatttggaatagttaatgggggttaatgttcctaatcaacttttggagatggcttgtaatttcttaaat |
211 |
Q |
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| T |
27446147 |
gttttgagatggtgtccgacttcaaagttattatttggaatagttgatgggggttaatgttcctaatcaacttttggagatggcttgtaatttcttaaat |
27446246 |
T |
|
| Q |
212 |
tgtagtcaaggcgctattccttttaagcatctgggaacctatgttggataaattgtgtggtagattgaattcttggagaaataaatatgttaatattggg |
311 |
Q |
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| T |
27446247 |
tgtagtcaaggcgctattccttttaagcatctgggaacctatgttggataaattgtgtggtaaattgaattcttggaaaaataaatatgttaatattggg |
27446346 |
T |
|
| Q |
312 |
ggccatatagtgttggttaatttggttttgaattccgttccggttttttaatttggtgtggcacatgtatttggcagtgatttttcttatgggtgttccg |
411 |
Q |
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| T |
27446347 |
ggccatatagtgttggttaatttggttttgaattctgttccgattttttaatttgatgtggcacatgtatttggcagtgattttccttatgggtgttccg |
27446446 |
T |
|
| Q |
412 |
tttatttacggagcctttgtttgtgtattatgttatattcacctatgtacgacttgtggcgaaatagagttaataatnnnnnnnnnttgtttaaaaaata |
511 |
Q |
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| T |
27446447 |
tttatttacggagcctttatttatgtattatgttatattcgcctatgtacgacttgtggcggaatagagttaataat-aaaaaaatttgtttaaaaagta |
27446545 |
T |
|
| Q |
512 |
agactttaatttgaggttgtgaacgtgtcaccactttgatatttgagagaattgcagtcaaatatgtttgataaaagctcaatcacaaaaaatttagaac |
611 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27446546 |
agactttaatttgaggttgtgaacgtgacaccactttgatatttgagagaattgcagtcaaatatgtttgataaaa-ctcaatcacaaaaaatttagaac |
27446644 |
T |
|
| Q |
612 |
actattgataaccataatctcaattttgaatatccaatgttatagactcaataacctgtagatatattataaccatgttgccttaagagtctgaacttga |
711 |
Q |
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| T |
27446645 |
actattgataaccataatctcaattttgaatatccaatgttatagactcaataacctgtagatatattataaccatgttgccttaagagtctgaacttga |
27446744 |
T |
|
| Q |
712 |
gtgatgtggcatataagttattcttc |
737 |
Q |
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| T |
27446745 |
gtgatgtggcatataagttattcttc |
27446770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 737
Target Start/End: Original strand, 27329175 - 27329261
Alignment:
| Q |
651 |
ttatagactcaataacctgtagatatattataaccatgttgccttaagagtctgaacttgagtgatgtggcatataagttattcttc |
737 |
Q |
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||||||| ||||| ||||||||||| || ||||||||||||||| || |||||||||| ||| |||||||| ||| || |||||| |
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| T |
27329175 |
ttatagattcaatgacctgtagataaatcataaccatgttgcctcaaaagtctgaactcacgtgctgtggcatgtaaattcttcttc |
27329261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 661 - 737
Target Start/End: Complemental strand, 18839783 - 18839707
Alignment:
| Q |
661 |
aataacctgtagatatattataaccatgttgccttaagagtctgaacttgagtgatgtggcatataagttattcttc |
737 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||| |
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| T |
18839783 |
aataacctgtagatatatcataaccatgttgcctcaagagtctgaacttgagtgctgtggcatgcaagttcttcttc |
18839707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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