View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_10 (Length: 471)
Name: NF17796_low_10
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 176 - 465
Target Start/End: Complemental strand, 1100389 - 1100100
Alignment:
| Q |
176 |
ataatcgatgatcttcattgttttaaactaattagatcacattaatttcatattttcattcgagtttctcttgttgcatttgatttcgatgcatctgtta |
275 |
Q |
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| T |
1100389 |
ataatcgatgatcttcattgttttaaactaattagatcacattaatttcatattttcattcgagtttctcttgttgcatttgatttcgatgcatctgtta |
1100290 |
T |
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| Q |
276 |
cggttaatcgatctgttctgttttctgtttcattttggattacattgcatagcttgttcttcgattgaaatattttattcatgagaaaattggagatgat |
375 |
Q |
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| T |
1100289 |
cggttaatcgatctgttctgttttctgtttcattttggattgcattgcatagcttgttcttcgattgaaatattttattcatgagaaaattggagatgat |
1100190 |
T |
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| Q |
376 |
gcactgtcagtgtaatttttgcactgacgacctagaagaacatatgtggtagttattatttctaaacaacggttatgatttgatgatgtc |
465 |
Q |
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| T |
1100189 |
gcactgtcagtgtaatttttgcactgacgacctagaagaaaatatgtggtagttattatttctaaacaacggttatgatttgatgatgtc |
1100100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 1100548 - 1100449
Alignment:
| Q |
17 |
ctttacactcaaacaaatcaatcaataatcatcatcgctttctctttctctttctctctcacgagtgagtcttccttcttccatcgaaccctaattcctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1100548 |
ctttacactcaaacaaatcaatcaataatcatcatcgctttctctttctctttctctctcacgagtgagtcttccttcttccatcgaaccctaattcctc |
1100449 |
T |
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