View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_11 (Length: 468)
Name: NF17796_low_11
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 209 - 452
Target Start/End: Complemental strand, 42636276 - 42636025
Alignment:
| Q |
209 |
taagtcacacatacctataaagtataaatacaagagacaaacaacacaaggtaaaatgattagtgttcttttgattagtgattgatacatgcatcaccca |
308 |
Q |
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| T |
42636276 |
taagtcacacatacctataaagtataaatacaagagacaaacaacacaaggtaaaatgattagtgttcttttgattagtgattgatacatgcatcaccca |
42636177 |
T |
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| Q |
309 |
tgcactgtgtatcatgttgcacctttatgatcacatgcatagcattgtatctccaaatatac--------tgtacctttatgattacttgcatagcattg |
400 |
Q |
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| T |
42636176 |
tgcactgtgtatcatgttgtacctttatgatcacatgcatagcattgtatctccaaatatactatcatgttgtacctttatgattacttgcatagcatcg |
42636077 |
T |
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| Q |
401 |
tatcacatgcatcgccaatgcactgatttacttcaatttttcccctatgtta |
452 |
Q |
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| T |
42636076 |
tatcacatgcatcaccaatgcactgatttacttcaatttttcccctatgtta |
42636025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 42636810 - 42636603
Alignment:
| Q |
1 |
gatccactactagtacatgcacgatgcgtgctacaatccacgtgtcacgcaattgtgaagagttgaaagtgtctcgtcactgcttaagacgcatcatgtc |
100 |
Q |
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| T |
42636810 |
gatccactactagtacatgcacgatgcgtgctacaatccacatgtcatgcaattgtgaagagttgaaagtgtctcgtcactgcttaagacgcatcacatc |
42636711 |
T |
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| Q |
101 |
gcgcaagactgttactgaaaatcatggagtgcggatagaaataattacttttataggttattggagattattggctaacccaaatatactattaagttgc |
200 |
Q |
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| T |
42636710 |
gcgcaagactgttactgaaaatcatggagtgcggatagaaataattacttttataggttattggagattattggctaacccaaatatactattaagttgc |
42636611 |
T |
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| Q |
201 |
ttagaaat |
208 |
Q |
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| T |
42636610 |
ttagaaat |
42636603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 49601203 - 49601162
Alignment:
| Q |
388 |
ttgcatagcattgtatcacatgcatcgccaatgcactgattt |
429 |
Q |
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| T |
49601203 |
ttgcatagcattgaatcacatacatcaccaatgcactgattt |
49601162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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