View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_12 (Length: 463)
Name: NF17796_low_12
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_12 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 22415730 - 22416175
Alignment:
| Q |
18 |
atggttgactaaatatgttgactattctaagtgttacctaatgggaaatagtgctggagctaccattgcataccatgcagggttacgtgtagttgaaaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
22415730 |
atggttgactaaatatgttgactattctaagtgttacctaatgggtaatagtgctggagctaccattgcataccatgcagggctacgtgtacttgaaaag |
22415829 |
T |
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| Q |
118 |
gtgaatgattttgagccattgaagatccaagggttgatattgcgtcaaccattttttggtgggaccaataggactgaatcagagttgagacttgaaaatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22415830 |
gtgaatgattttgagccattgaagatccaagggttgatattgcgtcaaccattttttggtgggaccaataggactgaatcagagttgagacttgaaaatg |
22415929 |
T |
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| Q |
218 |
atccaaattttcctttgtgtgttagtgatttgtgttgggatttggcagtacctattggagttgatcgtaatcatgagtattgcaatccaacggttggaaa |
317 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22415930 |
atccaaattttcctttgtgcgttagtgatttgtgttgggatttggcattacctattggagttgatcgtaatcatgagtattgcaatccaacggttggaaa |
22416029 |
T |
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| Q |
318 |
tgatgttgatgaaaaattggataagataaaggatcaagggtggagggtattggtgagtattaacggtggggatctattggttgatcgtgctaaagagtta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22416030 |
tgatgttgatgaaaaattggataagataaaggatcaagggtggagggtattggtgagtattaacggtggggatctattggctgatcgtgctaaagagtta |
22416129 |
T |
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| Q |
418 |
gtgcaattgatggatgagaagggtgtggaagttgtcaaagattttc |
463 |
Q |
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| T |
22416130 |
gtgcaattgatggatgagaagggtgtggaagttgtcaaagattttc |
22416175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 22399896 - 22400341
Alignment:
| Q |
18 |
atggttgactaaatatgttgactattctaagtgttacctaatgggaaatagtgctggagctaccattgcataccatgcagggttacgtgtagttgaaaag |
117 |
Q |
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||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||| ||| ||||| || |||||||| ||||||||||||||||| |
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| T |
22399896 |
atggttgactaaatatgttgacttttcaaaatgttttctaatgggaaatagtgctggaggtacaattgcgtatcatgcaggactacgtgtagttgaaaag |
22399995 |
T |
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| Q |
118 |
gtgaatgattttgagccattgaagatccaagggttgatattgcgtcaaccattttttggtgggaccaataggactgaatcagagttgagacttgaaaatg |
217 |
Q |
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|||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| |
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| T |
22399996 |
atgaatgatcttgagccgttgaaaattcaagggttgatattgcgtcaaccattttttggtgggaccaataggactgagtcagagttaagacttgagaatg |
22400095 |
T |
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| Q |
218 |
atccaaattttcctttgtgtgttagtgatttgtgttgggatttggcagtacctattggagttgatcgtaatcatgagtattgcaatccaacggttggaaa |
317 |
Q |
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|||| ||||||||||||||||||||||||| ||||| || || |||| ||||| ||| | ||| |||||||||||| ||||| || |||||| || |
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| T |
22400096 |
atcctgtttttcctttgtgtgttagtgatttgatgtgggagttagcgttaccaattggtgttaaccgtgatcatgagtattccaatctaagggttgggaa |
22400195 |
T |
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| Q |
318 |
tgatgttgatgaaaaattggataagataaaggatcaagggtggagggtattggtgagtattaacggtggggatctattggttgatcgtgctaaagagtta |
417 |
Q |
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|| ||||||||||||| | | |||||| |||||||| | ||||||||| ||||||||||| || ||||| |||| ||||||||||||| ||| ||||| |
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| T |
22400196 |
tggtgttgatgaaaaacttgctaagattaaggatcatgagtggagggtgttggtgagtatgaatggtggagatccattggttgatcgtaataaggagttg |
22400295 |
T |
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| Q |
418 |
gtgcaattgatggatgagaagggtgtggaagttgtcaaagattttc |
463 |
Q |
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||| ||||| |||| || |||||||||||||| || || ||||||| |
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| T |
22400296 |
gtgaaattgttggaggaaaagggtgtggaagtggtgaaggattttc |
22400341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 22492748 - 22492815
Alignment:
| Q |
31 |
tatgttgactattctaagtgttacctaatgggaaatagtgctggagctaccattgcataccatgcagg |
98 |
Q |
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|||||||| |||||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
22492748 |
tatgttgattattctaagtgttatcttatgggaaaaagtgctggtgctaccattgcttaccatgcagg |
22492815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 46138629 - 46138587
Alignment:
| Q |
272 |
ttggagttgatcgtaatcatgagtattgcaatccaacggttgg |
314 |
Q |
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| T |
46138629 |
ttggagttgaccgtgatcatgagtattgtaatccaacggttgg |
46138587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 267743 - 267784
Alignment:
| Q |
139 |
aagatccaagggttgatattgcgtcaaccattttttggtggg |
180 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||| |
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| T |
267743 |
aagatcaaagggttgatattgcaccaaccattttttggtggg |
267784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 277445 - 277526
Alignment:
| Q |
139 |
aagatccaagggttgatattgcgtcaaccattttttggtgggaccaataggactgaatcagagttgagacttgaaaatgatc |
220 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||| || | ||||| | || || |||||||| |||||||||| |
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| T |
277445 |
aagatcaaagggttgatattgcaccaaccattttttggtggctcccaaaggacaaattcggaattgagactcgaaaatgatc |
277526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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