View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_13 (Length: 452)
Name: NF17796_low_13
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 9528039 - 9528460
Alignment:
| Q |
16 |
ataggcaaggaagtggggtctagtctgtgtctatgcttttaactttatgcgacataattattggacattattgctttcataccttcttctcatgatatat |
115 |
Q |
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| T |
9528039 |
ataggcaaggaagtggggtctagtctgtgtctatgcttttaattttatgcgacataattattggacattattgctttcataccttcttctcatgatatat |
9528138 |
T |
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| Q |
116 |
catgtcatatttattatatactttgttatattgtttgttgtagaattggattcggatctttaagtaatattaagtgtatgtttggtatcataatggattt |
215 |
Q |
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| T |
9528139 |
catgtcatatttattatatactttgttatattatttgttgtagaattggattcggatcttacagtaatattaagtgtatgtttggtatcataatggattc |
9528238 |
T |
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| Q |
216 |
taatatatttattgtgatatcaaatatgagttcggtcttgcggatgtgaaaagtttgagtaggatgaaatacttcgttaaaattgatcaatcatannnnn |
315 |
Q |
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| T |
9528239 |
taacatatatattgtgatattaaacatgagttcggtcttacggatatgaaaagtttgagtaggatgagatacttcgataaaattggtcaatcatattttt |
9528338 |
T |
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| Q |
316 |
nnagtagagatgagttgt--cagtaggtgaatacttctcatgcatatgatagaagaatatgatagcatgttgtttactatatattcgacaacacaaagaa |
413 |
Q |
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|||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
9528339 |
ttagtagagatgagttgtcacagtaggtaaatacttctcaaacgtatgatagaagaatatgatagcatgttgtttactatatattcggcaacacaaaaaa |
9528438 |
T |
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| Q |
414 |
tttgtcaagagcacgatgattt |
435 |
Q |
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| T |
9528439 |
tttgtcaagagcacgatgattt |
9528460 |
T |
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