View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_14 (Length: 449)
Name: NF17796_low_14
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 35953927 - 35954364
Alignment:
| Q |
1 |
aaattttgttacaacaagtcaaatcaaatatattgaaaacatatgaggggattaatccacaaattnnnnnnnnnnnnnnnnnnnnnnaaatcttggttct |
100 |
Q |
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| T |
35953927 |
aaattttgttacaacaagtcaaatcaaatatattgaaaacatatgaggggattaatccacaaattagaagaagaataagaagaagaaaaatcttggttct |
35954026 |
T |
|
| Q |
101 |
accttctcgacaaataaatcaagaccaagacaatcgcatagctttatctatcacctatgcattgttagctacttctatactgtataaaatatcgatacgt |
200 |
Q |
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||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| || ||||||||||| | | |
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| T |
35954027 |
accttctcgactaattaatcaagaccaagacaatcgtatagtcttatctatcacctatgcattgttatctacttctatattgaataaaatatcgcgatgc |
35954126 |
T |
|
| Q |
201 |
tccaaacaaatacacaatagtaaagttaatcaaatcagatgaatcgtccnnnnnnnnnnngt---acaaaatgaatcgtcttcttatcattcttcccttt |
297 |
Q |
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||||| ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
35954127 |
tccaaccaaatacacaatagtgaagttaatcaaatcagatatatcgtcttttttttttttttttgacaaaatgaatcgtcttcttatcattcttcccttt |
35954226 |
T |
|
| Q |
298 |
acaaactacattaaagattaaaaaattatcagccatttcaattccgcaatttttcgcattccatctcattcatttgaaaatcaaatcacaaattatcttt |
397 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35954227 |
acaaaccacattaaagattagaaaattatcagccatttcaattccgcaatttttcgcattccatctcattcatttgaaaatcaaattacaaattatcttt |
35954326 |
T |
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| Q |
398 |
gtttttgggcaacttgcgaataaatggctagtagtttc |
435 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
35954327 |
gtttttgggcaacttgcgagtaaatggctagtagtttc |
35954364 |
T |
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