View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_16 (Length: 428)
Name: NF17796_low_16
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 65 - 276
Target Start/End: Complemental strand, 24706561 - 24706350
Alignment:
| Q |
65 |
tccaattaacaataatgatgaacagaaaaagtttgataggaagcagaagaaaactaaccaataaagtgaaaccagtgacagcagcaaaagaagtagccat |
164 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24706561 |
tccaattaacaataatgatgaagagaaaaagtttgataggaagcagaagaaaactaaccaataaagtgaaaccagtgacagcagcaaaagaagtagccat |
24706462 |
T |
|
| Q |
165 |
ggaagcaccagagagaggtaactcaccaagatgaccaacaaacataactgaaataagattgataccaaaatttaaaagtgcaactgatatcaatggccct |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24706461 |
ggaagcaccagagagaggtaactcaccaagatgaccaacaaacataactgaaataagattgataccaaaatttaaaaatgcaactgatatcaatggccct |
24706362 |
T |
|
| Q |
265 |
gatagccataac |
276 |
Q |
| |
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|||||||||||| |
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| T |
24706361 |
gatagccataac |
24706350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 30514300 - 30514493
Alignment:
| Q |
84 |
gaacagaaaaagtttgata-ggaagcagaagaaaactaaccaataaagtgaaaccagtgacagcagcaaaagaagtagccatggaagcaccagagagagg |
182 |
Q |
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|||||||| |||||||||| ||||||| | ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30514300 |
gaacagaacaagtttgatatggaagcaaagaaaaacataccaataaactgaaaccagtgacagaagcaaaagaagtagccatggaagcaccagagagagg |
30514399 |
T |
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| Q |
183 |
taactcaccaagatgaccaacaaacataactgaaataagattgataccaaaatttaaaagtgcaactgatatcaatggccctgatagccataac |
276 |
Q |
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| T |
30514400 |
taactcaccaagatgaccaacaaacataactgaaataagattgataccaaaatttaaaagtgtaactgatatcaatggccctgatagccataac |
30514493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 30488949 - 30489109
Alignment:
| Q |
115 |
aaactaaccaataaagtgaaaccagtgacagcagcaaaagaagtagccatggaagcaccagagagaggtaactcaccaagatgaccaacaaacataactg |
214 |
Q |
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||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
30488949 |
aaacttaccaataaactgaaaccagtaacagaagcaaaagaagtagccatggaagcaccagagagagataactcaccaagatgaccaacaaacataagtg |
30489048 |
T |
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| Q |
215 |
aaataagattgataccaaaatttaaaagtgcaactgatatcaatggccctgatagccataa |
275 |
Q |
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|||||| |||||||||| ||||||| |||| ||||||||||||||| ||||||| |||||| |
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| T |
30489049 |
aaataatattgataccataatttaagagtgtaactgatatcaatggtcctgataaccataa |
30489109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 112 - 275
Target Start/End: Original strand, 30503655 - 30503818
Alignment:
| Q |
112 |
agaaaactaaccaataaagtgaaaccagtgacagcagcaaaagaagtagccatggaagcaccagagagaggtaactcaccaagatgaccaacaaacataa |
211 |
Q |
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|||||| | ||||||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
30503655 |
agaaaatttaccaataaactgaaaccagtaacagaagcaaaagaggtagccatggaagcaccagagagagataactcactaagatgaccaacaaacataa |
30503754 |
T |
|
| Q |
212 |
ctgaaataagattgataccaaaatttaaaagtgcaactgatatcaatggccctgatagccataa |
275 |
Q |
| |
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|||||||||| |||||||||||||||| |||| ||||||||||||||| ||||||| |||||| |
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|
| T |
30503755 |
gtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgataaccataa |
30503818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 24706281 - 24706203
Alignment:
| Q |
345 |
aacaatcaatggagaatgaagagacatgttttggtttagggtttagttttctcctctc--tctcacactgtttcttctc |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24706281 |
aacaatcaatggagaatgaagagacatgttttggtttagggtttagttttctcctctctctctcacactgtttcttctc |
24706203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 24706617 - 24706580
Alignment:
| Q |
17 |
atataacatacattaataatacttaatcatacaactac |
54 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
24706617 |
atataacatacattaataatacttaatcatacaactac |
24706580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 30489173 - 30489209
Alignment:
| Q |
345 |
aacaatcaatggagaatgaagagacatgttttggttt |
381 |
Q |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
30489173 |
aacaatcaatgaagaatgaagagacatgttttagttt |
30489209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 30503882 - 30503918
Alignment:
| Q |
345 |
aacaatcaatggagaatgaagagacatgttttggttt |
381 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||| |
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|
| T |
30503882 |
aacaattaatgaagaatgaagagacatgttttggttt |
30503918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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