View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_17 (Length: 414)
Name: NF17796_low_17
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 22 - 385
Target Start/End: Complemental strand, 30285524 - 30285161
Alignment:
| Q |
22 |
taaccaccaaccagtcggtttttgtttgaaccggttggtccggttttcacaacactggtgaaaagagaagaaagggtgtttgaatttgtatttgtttatg |
121 |
Q |
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| T |
30285524 |
taaccaccaaccggtcggtttttgtttgaaccggttggtccggttttcacaacactggtgaaaagagaagaaagggtgtttgaatttgtatttgtttatg |
30285425 |
T |
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| Q |
122 |
catgtgtgtgggactaggaaagaaaagtgatggtgtctttttaaaaaatgctaatggcactgcatttttaatttttaattaggtgagtgttgtttttacg |
221 |
Q |
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| T |
30285424 |
catgtgtgtggaactaggaaagaaaagtgatggtgtctttttaaaaaatgctaatggcactgcatttttaatttttaattaggtgagtgttgtttttacg |
30285325 |
T |
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| Q |
222 |
tgtgagactttgtgatacatgtgtgagagacaaagggtgacccattgattaacattctttaattaatccacactcaatgctttttggacttcaattattg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30285324 |
tgtgagactttgtgatacatgtgtgagagacaaagggtgacccattgattaacattctttaattaatccacactcaatgctttttggacttcaattattg |
30285225 |
T |
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| Q |
322 |
atcatatggttttatatttgcttaataaatcttgagcatatcactaattgggtataggcttaat |
385 |
Q |
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| T |
30285224 |
atcatatggttttatatttgcttaataaatcttgaccatgtcatttattgggtatgggtttaat |
30285161 |
T |
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