View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17796_low_19 (Length: 397)

Name: NF17796_low_19
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17796_low_19
NF17796_low_19
[»] chr6 (11 HSPs)
chr6 (19-383)||(6497564-6497928)
chr6 (19-383)||(6460744-6461108)
chr6 (56-300)||(6519576-6519820)
chr6 (145-300)||(6529216-6529371)
chr6 (149-305)||(6506507-6506663)
chr6 (152-305)||(6472041-6472194)
chr6 (142-305)||(6466347-6466510)
chr6 (142-306)||(6515089-6515253)
chr6 (173-261)||(7204154-7204242)
chr6 (173-261)||(7238905-7238993)
chr6 (176-258)||(6458424-6458506)
[»] chr7 (3 HSPs)
chr7 (140-294)||(9664312-9664466)
chr7 (176-305)||(3752829-3752958)
chr7 (149-258)||(4047253-4047362)
[»] chr4 (1 HSPs)
chr4 (140-294)||(13535336-13535490)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 6497564 - 6497928
Alignment:
Q  19 taaggtgacaccgagatcactaaaagaagatactacatgtttttcattggatgttttcgtagcggaagtgatggtaagatcagcagtgaaaacttgagat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497564 taaggtgacaccgagatcactaaaagaagatactacatgtttttcattggaagttttcgtagcggaagtgatggtaagatcagcagtgaaaacttgagat 6497663  T
Q  119 atagcagaagggctgatggaaatagatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497664 atagcagaagggctgatggaaatagatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgt 6497763  T
Q  219 tgttgagaacaaagttttggaagaaagagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggataatagttgaact 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497764 tgttgagaacaaagttttggaagaaagagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggataatagttgaact 6497863  T
Q  319 tggatctgtcattggaaaaggagagctcattttgttgttgatagtaaatatctatttttggtgat 383  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6497864 tgaatctgtcattggaaaaggagagctcattttgttgttgatagtaaatctctatttttggtgat 6497928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 6461108 - 6460744
Alignment:
Q  19 taaggtgacaccgagatcactaaaagaagatactacatgtttttcattggatgttttcgtagcggaagtgatggtaagatcagcagtgaaaacttgagat 118  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||    
T  6461108 taaggtgacactgagatcactaaaggaagagactacatgtttttcattggaagtttttgtagaggaagtgatggtaagatcagcagtgaaaacttgggat 6461009  T
Q  119 atagcagaagggctgatggaaatagatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgt 218  Q
    |||||||||||||||||||||| |||||||||||| |||||||| |||||||  || ||| ||||||||||||||||||| ||||| ||||||||||| |    
T  6461008 atagcagaagggctgatggaaagagatggatatgagacagaaagagatgagttggaagatctgatgaggtaaggatgaaagtattccggttggtcaccat 6460909  T
Q  219 tgttgagaacaaagttttggaagaaagagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggataatagttgaact 318  Q
    ||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||  ||||||||||||||||||||| ||||  | ||| |||||    
T  6460908 tgtcgagaacaaagttttggaagaaggagtttgtagggagtggtttggatagcagatttgaagagaagaatttggaggggtcagggaggacagtggaact 6460809  T
Q  319 tggatctgtcattggaaaaggagagctcattttgttgttgatagtaaatatctatttttggtgat 383  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6460808 tggatctatcattggaaaaggagagctcattttgttgttgatagtaaatctctatttttggtgat 6460744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 56 - 300
Target Start/End: Complemental strand, 6519820 - 6519576
Alignment:
Q  56 tgtttttcattggatgttttcgtagcggaagtgatggtaagatcagcagtgaaaacttgagatatagcagaagggctgatggaaatagatggatatgaaa 155  Q
    |||||||| ||||| ||||| ||||  ||||| ||||||||||||||| |||||||||| |||||| |||||| | | | | ||   ||||| || ||||    
T  6519820 tgtttttcgttggaagtttttgtagaagaagttatggtaagatcagcattgaaaacttgggatataacagaagagtttaagaaacgtgatgggtaagaaa 6519721  T
Q  156 cagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggg 255  Q
    ||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  6519720 cagaaagtgatgagtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtagg 6519621  T
Q  256 gaggggtttagatagcagatttttagagaagaatttggaggggtc 300  Q
    ||||||||| ||||| | ||||  |||||||||||||||||||||    
T  6519620 gaggggtttggatagtaaatttggagagaagaatttggaggggtc 6519576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 145 - 300
Target Start/End: Original strand, 6529216 - 6529371
Alignment:
Q  145 tggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaa 244  Q
    |||||| |||| |||||||||||||||||| ||||||||||| || |||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  6529216 tggataggaaatagaaagtgatgagtctgaagatttgatgagatatggatgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaa 6529315  T
Q  245 gagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtc 300  Q
    |||||||| ||||||||| | ||||||||||||  |||||||||||||||||||||    
T  6529316 gagtttgtagggaggggtgtggatagcagatttggagagaagaatttggaggggtc 6529371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 149 - 305
Target Start/End: Original strand, 6506507 - 6506663
Alignment:
Q  149 tatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagt 248  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||   ||||| |||||||||||||||||||||||||||||||    
T  6506507 tatgagacagaaagtgatgagtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaagagt 6506606  T
Q  249 ttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctggga 305  Q
    |||| || |||||| | ||||||||||||  ||||||||||||||||||||| ||||    
T  6506607 ttgtaggcaggggtgtggatagcagatttggagagaagaatttggaggggtcaggga 6506663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 6472194 - 6472041
Alignment:
Q  152 gaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttg 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| || || || |||| ||||||||||||||||||||    
T  6472194 gaaacagaaagtgatgagtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaagagtttg 6472095  T
Q  252 tggggaggggtttagatagcagatttttagagaagaatttggaggggtctggga 305  Q
    | ||||||||| | ||||||| ||||   |||||||||||||||||||| ||||    
T  6472094 tagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggga 6472041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 142 - 305
Target Start/End: Original strand, 6466347 - 6466510
Alignment:
Q  142 agatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaag 241  Q
    |||||| || |||| |||||||||||||| ||| ||||||||||| || |||||||  ||||||||||||||||| || |||||||||||||||||||||    
T  6466347 agatgggtaagaaagagaaagtgatgagtttgaagatttgatgagatatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaag 6466446  T
Q  242 aaagagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctggga 305  Q
    ||||||||||||||||||||| | ||||||||||||  ||||||||| || | |||||| ||||    
T  6466447 aaagagtttgtggggaggggtgtggatagcagatttggagagaagaagtttgtggggtcaggga 6466510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 6515253 - 6515089
Alignment:
Q  142 agatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaag 241  Q
    |||||| ||||||| |||||||||||||| || |||| |||||||||||||||| |  |||||||||   ||||| |   |||||  |||||||||||||    
T  6515253 agatgggtatgaaaaagaaagtgatgagtttgttgatctgatgaggtaaggatggatgtattcaggtgtttcaccctctctgagagaaaagttttggaag 6515154  T
Q  242 aaagagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggat 306  Q
    ||||||||||||||||||||| ||||||| ||||||   |||||||| |||||||| || |||||    
T  6515153 aaagagtttgtggggaggggtgtagatagaagatttggggagaagaacttggagggatcagggat 6515089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 7204242 - 7204154
Alignment:
Q  173 gatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggagggg 261  Q
    |||||||| |||||||| |||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||  | |||||||||||    
T  7204242 gatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggg 7204154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 7238993 - 7238905
Alignment:
Q  173 gatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggagggg 261  Q
    |||||||| |||||||| |||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||  | |||||||||||    
T  7238993 gatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggg 7238905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 6458424 - 6458506
Alignment:
Q  176 gatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggag 258  Q
    ||||||||||||||||| ||||  || ||||||  |||||| || |  |||||||| |||||||||||||||||||| |||||    
T  6458424 gatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttgggag 6458506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 140 - 294
Target Start/End: Complemental strand, 9664466 - 9664312
Alignment:
Q  140 atagatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttgga 239  Q
    ||||||||||| |||| ||||||||||||||  || ||||||| ||| ||||| ||||  ||||||  ||||||||| || |||||||||||||||||||    
T  9664466 atagatggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttgga 9664367  T
Q  240 agaaagagtttgtggggaggggtttagatagcagatttttagagaagaatttgga 294  Q
    ||||||||||||| ||||||||| ||||||| ||||||  ||||||||| |||||    
T  9664366 agaaagagtttgtagggaggggtgtagatagaagatttggagagaagaaattgga 9664312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 305
Target Start/End: Complemental strand, 3752958 - 3752829
Alignment:
Q  176 gatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggaggggtttagatagcagat 275  Q
    ||||||||||||||||| ||||  |||||||||  |||||| |||| |||||||||||||||||||||||||||||| ||||||||| | ||||| || |    
T  3752958 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 3752859  T
Q  276 ttttagagaagaatttggaggggtctggga 305  Q
    |||  |||||||| || || |||| |||||    
T  3752858 tttgtgagaagaagtttgaagggtttggga 3752829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 4047253 - 4047362
Alignment:
Q  149 tatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagt 248  Q
    ||||||||||| || || |||| ||| |||||||  |||||||| ||||  |||||| |||| ||||| || |  |||||||| ||||||||||| ||||    
T  4047253 tatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatgagt 4047352  T
Q  249 ttgtggggag 258  Q
    |||| |||||    
T  4047353 ttgtagggag 4047362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 140 - 294
Target Start/End: Complemental strand, 13535490 - 13535336
Alignment:
Q  140 atagatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttgga 239  Q
    ||||||||||| |||| ||||||||||||||  || ||||||| ||| ||||| ||||  ||||||  ||||||||| || |||||||||||||||||||    
T  13535490 atagatggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttgga 13535391  T
Q  240 agaaagagtttgtggggaggggtttagatagcagatttttagagaagaatttgga 294  Q
    ||||||||||||| ||||||||| ||||||| ||||||  ||||||||| |||||    
T  13535390 agaaagagtttgtagggaggggtgtagatagaagatttggagagaagaaattgga 13535336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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