View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_2 (Length: 727)
Name: NF17796_low_2
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 224 - 644
Target Start/End: Complemental strand, 8451130 - 8450709
Alignment:
| Q |
224 |
ccatcagtttggtgagaggtagtagta--gtaggtgtatatgtagtcaactaatttaattgcgttgaggtttacctttgacaatcaaaatgtaaacaaaa |
321 |
Q |
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| T |
8451130 |
ccatcagtttggtgagaggtagtagtatagtaggtgtatatgtagtcaactaatt-aattgcgttgaggtttacctttgacaatcaaaatgtaaacaaaa |
8451032 |
T |
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| Q |
322 |
gtgtgtaagcataaaaggaagagaatgaaagaatattaattattggctgttgaaagaatgacttttgacttgttgtttggtgaaagttatgtttgaagaa |
421 |
Q |
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| T |
8451031 |
gtgtgtaagcataaaaggaagagaatgaaagaatattaattattggctgttgaaagaatgacttttgacttgttgtttggtgaaagttatgtttgaagaa |
8450932 |
T |
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| Q |
422 |
agcgtgtacgtgccttgttgaacatttagattatagtggtctaggaaaaaagtgaaagtgagtaatagagaaagaaagtgtgcacgatttgcatttagaa |
521 |
Q |
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| T |
8450931 |
agcgtgtacgtgccttgttgaacatttagattatagtggtctaggaaaaaagtgaaagtgagtaatagagaaagaaagtgtgcacgatttgaatttagaa |
8450832 |
T |
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| Q |
522 |
taagtagaagtgacatcacattgaaccactagccagacagtaatcactagataaagatcaaactagcatggctacatagaaaaatgcaaaaagaaatgaa |
621 |
Q |
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| T |
8450831 |
taagtagaagtgacatcacattgaaccactagccagacagtaatcactagataaagatcaaactagcatggctacatagaaaaatgcaaaaacaaatgaa |
8450732 |
T |
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| Q |
622 |
aagagaatgaattcgtgaactgc |
644 |
Q |
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| T |
8450731 |
aagagaatgaagtcgtgagctgc |
8450709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 8451318 - 8451194
Alignment:
| Q |
37 |
gtgttaattatatgtgttgatgacagttgacacaatcatgttcttctgttgttatgtattaggtttgactttgagttgactagagttgctttatattgca |
136 |
Q |
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| T |
8451318 |
gtgttaattatatgtgttgatgacagttgacacaatcatgttcttctgttgttatgtattaggtttgactttgagttgactagagttgctttatattgca |
8451219 |
T |
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| Q |
137 |
aaagtgg-aaagaaatagttacacc |
160 |
Q |
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| T |
8451218 |
aaagaggaaaaaaaatagttacacc |
8451194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 713
Target Start/End: Complemental strand, 8450686 - 8450636
Alignment:
| Q |
663 |
atggttagggtttgaactcggactttgtatatagtatttattgttcttact |
713 |
Q |
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| T |
8450686 |
atggttagggtttgaaccccgactttgtatatattatgcattgttcttact |
8450636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 707
Target Start/End: Complemental strand, 6582349 - 6582312
Alignment:
| Q |
670 |
gggtttgaactcggactttgtatatagtatttattgtt |
707 |
Q |
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| T |
6582349 |
gggtttgaactcggactttgtatatattatgtattgtt |
6582312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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