View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_21 (Length: 388)
Name: NF17796_low_21
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 146 - 372
Target Start/End: Original strand, 42632400 - 42632618
Alignment:
| Q |
146 |
aatcctatttttacac-tttctactacatatcaatatcaatgggaaaagcatcaaggtggtttcgtggccttcttggtctcnnnnnnnccgaacatggtt |
244 |
Q |
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| T |
42632400 |
aatcctatttttacacctttctactacatatcaatatcaatgggaaaagcatcaaggtggtttcgtggccttcttggtctcaaaaaaaccgaacatggtt |
42632499 |
T |
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| Q |
245 |
cttcttcttcttctgatcaaaaaccacctaaggagaaacgtagatggagttttgtaaaatcatatagagaagaacaacaacatagcactagcagccacgt |
344 |
Q |
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| T |
42632500 |
ct---tcttcttctgatcaaaaaccacctaaggagaaacgtagatggagttttgtaaaatcatatagagaagaacaacaaca------tagcagccacgt |
42632590 |
T |
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| Q |
345 |
cacgtttccgacagaacatgtccaaaac |
372 |
Q |
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| T |
42632591 |
cacgtttccgacagaacatgtccaaaac |
42632618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 42632233 - 42632294
Alignment:
| Q |
13 |
tactagagatgattggaaagtgtgttaataaagttgatttgccttgtcattcaaaaacaaga |
74 |
Q |
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| T |
42632233 |
tactagagatgattggaaagtgtgttaataaagttgatttgccttgacattcaaaaacaaga |
42632294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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