View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_23 (Length: 353)
Name: NF17796_low_23
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 43870074 - 43870386
Alignment:
| Q |
1 |
ttagaattcctattgggcagtaccttttctgtttagaccctacttacaggtgcaaacaattcaattaaactgtcgcactcacacaactattatgggctat |
100 |
Q |
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| T |
43870074 |
ttagaattcctattgggcagtaccttttctgtttagaccctacttacaggtgcaaacaattcaattaaactgtcgcactcacacaactattatgggctat |
43870173 |
T |
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| Q |
101 |
gtctaacgttcacaatttagtggattccnnnnnnnnnctttctaggaattaatggaagtcaagaaaatagaattaatcttgtcaatctagcaaacaaata |
200 |
Q |
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| T |
43870174 |
gtctaacgttcacaatttagtggattcctttt------tttccaggaattaatggaagtcaagaaaatagaattaatcttgtcaatctagctaacaaata |
43870267 |
T |
|
| Q |
201 |
ttaagttggtcagagtgaaactcaacttaggtttcttaagcaagattttgtgttcatgccttatagatggnnnnnnnnttgtgcttaaaacgagagacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | |
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| T |
43870268 |
ttaagttggtcagagtgaaactcaacttaggtttgttaagcaagattttgtgttcatgccttgtagatggaaaaaaaattgtgcttaaaacgagagacct |
43870367 |
T |
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| Q |
301 |
cattaaagatggttatata |
319 |
Q |
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|||||||| |||||||||| |
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| T |
43870368 |
cattaaaggtggttatata |
43870386 |
T |
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