View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_24 (Length: 345)
Name: NF17796_low_24
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 12309650 - 12309342
Alignment:
| Q |
18 |
ctgatataagttgttggaagaaaaaccgtgcctgcagcacaaataacggtcactaacgttaaccgcagcagcagtactgcattcaaaatccatgtattga |
117 |
Q |
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| T |
12309650 |
ctgatataagttgttggaagaaaaaccgtgcctgcagcacaaataacggtcactaacgttaaccgcagcagcggtactgcattcaaaatccatgaattga |
12309551 |
T |
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| Q |
118 |
atatgataagaacctcatcctcgctgaaccgtcctgcattgcatattcgctcaaatagctctcctccagaagcatattccatcacaatagctaaatgtgt |
217 |
Q |
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| T |
12309550 |
atatgattagaacctcatcctcgctgaaccgtcctgcattgcatattcgctcaaatagctctcctccggaagcatattccatcacaatagctaaatgtgt |
12309451 |
T |
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| Q |
218 |
gggggtaagtatgacctatatttgacgagtatgagtacggat--tagtatagatagatctataagcttggagcttagagcttagaagacactggacgtct |
315 |
Q |
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| T |
12309450 |
aggggtaagtattacctatatttgacgagtatgagtacggattataatatagatagaactata-------agcttagagcttagaagacaccggacgtca |
12309358 |
T |
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| Q |
316 |
atagagtacgaacctc |
331 |
Q |
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| T |
12309357 |
acagagtacgaacctc |
12309342 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 34077793 - 34077716
Alignment:
| Q |
122 |
gataagaacctcatcctcgctgaaccgtcctgcattgcatattcgctcaaatagctctcctccagaagcatattccat |
199 |
Q |
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| T |
34077793 |
gatacgaacctcatcctcactgaatcgccccgcattgcatattcgctcaaatagctctcccccggaagcatattccat |
34077716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 44633001 - 44633090
Alignment:
| Q |
128 |
aacctcatcctcgctgaaccgtcctgcattgcatattcgctcaaatagctctcctccagaagcatattccatcacaatagctaaatgtgt |
217 |
Q |
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| T |
44633001 |
aacctcatcttcactgaacctgccagcattgcatatcctctcaaagagttctcctccagctgcatactccatcacaattgctaaatgtgt |
44633090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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