View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_27 (Length: 340)
Name: NF17796_low_27
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 1047299 - 1047598
Alignment:
| Q |
1 |
tgatgtctataatcattgtgggccttatggaaattgcatttataacccgtctccaatatgtcaatgtttagatgggtttgagcctaaattgccacaaaat |
100 |
Q |
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| T |
1047299 |
tgatgtctataatcattgtggcccatatggaaattgcatttataacccgtctccaatttgtcaatgtttagatgggtttgagcctaaatcaccacaaaat |
1047398 |
T |
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| Q |
101 |
tgggacgcatcaaattggacagaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaat |
200 |
Q |
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| T |
1047399 |
tgggacgcatcaaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaat |
1047498 |
T |
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| Q |
201 |
tgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattcaaactt |
300 |
Q |
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| T |
1047499 |
tgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaaaaataaatgcttggaaaattgttcttgcatggcttattcaaactt |
1047598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 1072112 - 1072432
Alignment:
| Q |
1 |
tgatgtctataatcattgtgggccttatggaaattgcatttataacccgtctccaatatgtcaatgtttagatgggtttgagcctaaattgccacaaaat |
100 |
Q |
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| T |
1072112 |
tgatgtctataatcgttgcggcccttatggaaattgcattcataacccgtctccaatttgccaatgtttagatgggtttgagcctaaatcaccacaaaat |
1072211 |
T |
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| Q |
101 |
tgggacgcatcaaattggacagaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaat |
200 |
Q |
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| T |
1072212 |
tggtacgcatcaaattggacacaaggatgtgtgcgcaaaggtgaagaaacatggaattgtggtgtgaatgatcgttttagaacattttctggattgaaat |
1072311 |
T |
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| Q |
201 |
tgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattcaaactt |
300 |
Q |
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| T |
1072312 |
tgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgtatggcttattcaaactt |
1072411 |
T |
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| Q |
301 |
aaatgtgagtgatggtagtgg |
321 |
Q |
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| T |
1072412 |
aaatgtgagtgatggtagtgg |
1072432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 1087773 - 1088072
Alignment:
| Q |
1 |
tgatgtctataatcattgtgggccttatggaaattgcatttataacccgtctccaatatgtcaatgtttagatgggtttgagcctaaattgccacaaaat |
100 |
Q |
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|||||||||||||| |||||| ||||||||||||||| || ||||| ||||||||| || |||||||||||||||||||||||||||| |||| ||||| |
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| T |
1087773 |
tgatgtctataatcgttgtggcccttatggaaattgcgttcataacgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccaaaaaat |
1087872 |
T |
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| Q |
101 |
tgggacgcatcaaattggacagaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaat |
200 |
Q |
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| T |
1087873 |
tgggacgcatcaaattggacacaaggatgtgtgcgcaaaggtgacgaagattggagatgtggagtgaatgatagttttgtaagattttatggattgaaat |
1087972 |
T |
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| Q |
201 |
tgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattcaaactt |
300 |
Q |
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| T |
1087973 |
tgccagatacatcacatacttgggttgatgcaaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattcaaactt |
1088072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 1104326 - 1104631
Alignment:
| Q |
1 |
tgatgtctataatcattgtgggccttatggaaattgcatttataacccgtctccaatatgtcaatgtttagatgggtttgagcctaaattgccacaaaat |
100 |
Q |
| |
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||||| |||||||| |||||| ||||||||||| || ||| ||| ||||||||| |||||||||||||| |||||||| ||||||| |||||||||| |
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| T |
1104326 |
tgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaat |
1104425 |
T |
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| Q |
101 |
tgggacgcatcaaattggacagaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaat |
200 |
Q |
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|||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
1104426 |
tgggacacatttaattggacacaaggatgtgtgcgaaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctagtttgaaat |
1104525 |
T |
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| Q |
201 |
tgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattcaaactt |
300 |
Q |
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||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
1104526 |
tgccagaaacaacacatgcttgggttgatggtaatatgacacttgagaattgtaagaacaaatgcttggaaaattgttcttgcatggcttattcaaactt |
1104625 |
T |
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| Q |
301 |
aaatgt |
306 |
Q |
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| |||| |
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| T |
1104626 |
agatgt |
1104631 |
T |
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