View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17796_low_28 (Length: 339)

Name: NF17796_low_28
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17796_low_28
NF17796_low_28
[»] chr5 (23 HSPs)
chr5 (221-297)||(18843990-18844066)
chr5 (224-297)||(6852344-6852417)
chr5 (219-297)||(41688444-41688522)
chr5 (219-293)||(15051879-15051953)
chr5 (223-297)||(20321220-20321294)
chr5 (219-297)||(41427692-41427770)
chr5 (162-255)||(15051989-15052081)
chr5 (219-294)||(19579216-19579292)
chr5 (219-302)||(22645500-22645583)
chr5 (219-297)||(27339965-27340043)
chr5 (219-297)||(43235141-43235219)
chr5 (159-215)||(26021469-26021525)
chr5 (159-212)||(187812-187865)
chr5 (159-208)||(19377749-19377798)
chr5 (159-240)||(43005759-43005840)
chr5 (222-294)||(18051314-18051386)
chr5 (159-239)||(24648165-24648245)
chr5 (258-297)||(23172222-23172261)
chr5 (159-212)||(41427555-41427608)
chr5 (164-232)||(9996891-9996959)
chr5 (248-302)||(29270325-29270379)
chr5 (159-240)||(19579091-19579172)
chr5 (159-240)||(23172328-23172408)
[»] chr3 (30 HSPs)
chr3 (159-293)||(9169809-9169942)
chr3 (159-255)||(19348689-19348784)
chr3 (225-297)||(29067555-29067627)
chr3 (223-299)||(39428184-39428260)
chr3 (222-293)||(22355848-22355919)
chr3 (219-302)||(28746049-28746132)
chr3 (219-297)||(24619975-24620053)
chr3 (159-255)||(8592297-8592392)
chr3 (219-302)||(8592172-8592255)
chr3 (172-240)||(28135923-28135991)
chr3 (218-297)||(20766679-20766758)
chr3 (219-293)||(3041496-3041570)
chr3 (159-240)||(27676584-27676665)
chr3 (159-243)||(6861036-6861120)
chr3 (220-280)||(30727654-30727714)
chr3 (159-246)||(22970945-22971031)
chr3 (219-293)||(8560239-8560313)
chr3 (236-297)||(24649527-24649588)
chr3 (171-297)||(15806226-15806352)
chr3 (219-293)||(18014264-18014338)
chr3 (219-255)||(22971082-22971118)
chr3 (218-302)||(27676708-27676792)
chr3 (159-243)||(42696996-42697080)
chr3 (223-282)||(19348830-19348889)
chr3 (219-297)||(17064580-17064658)
chr3 (218-256)||(20756294-20756332)
chr3 (167-212)||(10591789-10591834)
chr3 (219-299)||(21553669-21553747)
chr3 (159-240)||(39428051-39428132)
chr3 (223-255)||(20766799-20766831)
[»] chr6 (28 HSPs)
chr6 (219-297)||(7223788-7223866)
chr6 (159-255)||(27890522-27890617)
chr6 (219-302)||(19748606-19748689)
chr6 (223-302)||(22498213-22498292)
chr6 (219-302)||(26053069-26053152)
chr6 (219-302)||(26073122-26073205)
chr6 (219-297)||(11327340-11327418)
chr6 (219-297)||(17543508-17543586)
chr6 (223-297)||(27233077-27233151)
chr6 (221-297)||(3573677-3573754)
chr6 (162-243)||(33593060-33593141)
chr6 (226-297)||(17103475-17103546)
chr6 (219-297)||(7918128-7918206)
chr6 (219-298)||(27614433-27614512)
chr6 (222-295)||(31108431-31108504)
chr6 (159-215)||(5422584-5422640)
chr6 (219-282)||(15527903-15527966)
chr6 (220-297)||(21354949-21355026)
chr6 (159-212)||(31407444-31407497)
chr6 (159-211)||(20400015-20400067)
chr6 (169-240)||(4841729-4841800)
chr6 (223-302)||(17250335-17250413)
chr6 (165-240)||(18490539-18490614)
chr6 (194-240)||(3573800-3573846)
chr6 (159-212)||(7621907-7621960)
chr6 (159-240)||(20432506-20432586)
chr6 (159-240)||(23897960-23898040)
chr6 (159-207)||(645422-645470)
[»] chr4 (28 HSPs)
chr4 (219-297)||(9770385-9770463)
chr4 (159-240)||(24719723-24719804)
chr4 (162-241)||(18403680-18403758)
chr4 (223-297)||(23064739-23064813)
chr4 (167-240)||(8011036-8011109)
chr4 (159-300)||(8409730-8409870)
chr4 (159-240)||(4157001-4157081)
chr4 (219-297)||(7045217-7045295)
chr4 (219-293)||(55476261-55476335)
chr4 (167-240)||(6346855-6346928)
chr4 (159-232)||(7044911-7044984)
chr4 (159-239)||(9149624-9149704)
chr4 (159-255)||(55476124-55476219)
chr4 (218-297)||(36121095-36121174)
chr4 (219-297)||(5375938-5376016)
chr4 (219-297)||(6346733-6346811)
chr4 (159-213)||(7045090-7045144)
chr4 (163-212)||(8020729-8020778)
chr4 (219-265)||(8010946-8010992)
chr4 (159-208)||(5846050-5846099)
chr4 (168-213)||(10394768-10394813)
chr4 (219-295)||(9911191-9911267)
chr4 (219-282)||(13551465-13551528)
chr4 (159-209)||(8743708-8743758)
chr4 (219-256)||(8367475-8367512)
chr4 (226-291)||(13023838-13023903)
chr4 (159-240)||(17466228-17466308)
chr4 (159-243)||(5884190-5884274)
[»] chr1 (24 HSPs)
chr1 (206-292)||(9954816-9954902)
chr1 (219-297)||(16125233-16125311)
chr1 (219-297)||(21846052-21846130)
chr1 (159-255)||(12002757-12002852)
chr1 (222-302)||(13100466-13100546)
chr1 (219-297)||(14074261-14074339)
chr1 (221-297)||(9351841-9351917)
chr1 (219-297)||(17055698-17055775)
chr1 (219-297)||(25146546-25146624)
chr1 (159-255)||(17197427-17197521)
chr1 (222-282)||(19009741-19009801)
chr1 (219-293)||(17197311-17197385)
chr1 (222-296)||(17869529-17869603)
chr1 (219-297)||(23528929-23529007)
chr1 (192-254)||(8773437-8773498)
chr1 (247-297)||(9954774-9954824)
chr1 (159-237)||(18891497-18891575)
chr1 (219-297)||(42179849-42179927)
chr1 (217-296)||(13276038-13276114)
chr1 (159-240)||(9954933-9955015)
chr1 (219-297)||(27502133-27502211)
chr1 (219-280)||(9321530-9321591)
chr1 (161-240)||(17055819-17055896)
chr1 (262-302)||(18304591-18304631)
[»] chr2 (33 HSPs)
chr2 (159-232)||(5395430-5395503)
chr2 (218-297)||(19262094-19262173)
chr2 (159-250)||(974474-974564)
chr2 (219-297)||(20063996-20064074)
chr2 (219-297)||(30433088-30433166)
chr2 (159-255)||(20034120-20034215)
chr2 (219-294)||(21869102-21869177)
chr2 (219-290)||(27523881-27523952)
chr2 (159-258)||(41002161-41002259)
chr2 (219-297)||(1405056-1405134)
chr2 (223-301)||(20033996-20034074)
chr2 (223-297)||(25538923-25538997)
chr2 (173-255)||(34578039-34578120)
chr2 (159-240)||(25539045-25539126)
chr2 (159-243)||(31023450-31023534)
chr2 (159-240)||(16766934-16767014)
chr2 (219-296)||(31237755-31237832)
chr2 (159-255)||(7301923-7302018)
chr2 (159-255)||(21869219-21869314)
chr2 (159-255)||(27523994-27524089)
chr2 (159-240)||(1690628-1690708)
chr2 (175-240)||(13502573-13502638)
chr2 (159-240)||(34841729-34841810)
chr2 (159-243)||(27406939-27407023)
chr2 (219-293)||(974611-974686)
chr2 (219-293)||(7302055-7302129)
chr2 (159-240)||(19492080-19492162)
chr2 (159-240)||(26251663-26251745)
chr2 (223-255)||(34578166-34578198)
chr2 (159-243)||(35565854-35565934)
chr2 (159-212)||(8428370-8428423)
chr2 (167-240)||(19519530-19519603)
chr2 (222-302)||(19245865-19245945)
[»] chr7 (28 HSPs)
chr7 (218-297)||(17811620-17811699)
chr7 (219-297)||(24989552-24989630)
chr7 (162-282)||(8253977-8254096)
chr7 (159-255)||(25842629-25842724)
chr7 (218-297)||(20570663-20570742)
chr7 (159-255)||(23618327-23618422)
chr7 (219-297)||(5058801-5058879)
chr7 (223-293)||(25842513-25842583)
chr7 (219-297)||(44944623-44944701)
chr7 (159-240)||(26565448-26565528)
chr7 (159-255)||(1981221-1981316)
chr7 (210-297)||(11326547-11326634)
chr7 (219-297)||(8304359-8304437)
chr7 (159-240)||(7307147-7307226)
chr7 (159-240)||(17809027-17809108)
chr7 (220-297)||(5715559-5715632)
chr7 (225-296)||(4247635-4247706)
chr7 (173-240)||(4574879-4574946)
chr7 (159-255)||(8304220-8304317)
chr7 (219-293)||(27221687-27221762)
chr7 (169-240)||(30294404-30294475)
chr7 (219-293)||(1981107-1981181)
chr7 (159-240)||(44944745-44944825)
chr7 (219-282)||(9685087-9685150)
chr7 (219-282)||(23618222-23618285)
chr7 (218-303)||(8572409-8572493)
chr7 (222-291)||(8629512-8629581)
chr7 (159-243)||(4247505-4247588)
[»] scaffold0186 (1 HSPs)
scaffold0186 (223-293)||(8718-8788)
[»] chr8 (24 HSPs)
chr8 (219-296)||(45403302-45403379)
chr8 (219-297)||(11879873-11879951)
chr8 (219-297)||(11897289-11897367)
chr8 (166-240)||(15761258-15761332)
chr8 (219-297)||(24414065-24414143)
chr8 (218-293)||(40541602-40541677)
chr8 (219-301)||(2040392-2040474)
chr8 (219-297)||(5922321-5922399)
chr8 (219-293)||(16752296-16752370)
chr8 (159-255)||(40541718-40541814)
chr8 (159-239)||(1018082-1018162)
chr8 (221-297)||(7489061-7489137)
chr8 (222-280)||(19704252-19704310)
chr8 (159-208)||(16752159-16752208)
chr8 (159-239)||(3094143-3094223)
chr8 (219-254)||(15294942-15294977)
chr8 (219-254)||(15475311-15475346)
chr8 (159-234)||(45403178-45403253)
chr8 (219-297)||(17647270-17647348)
chr8 (171-232)||(8582203-8582264)
chr8 (159-240)||(11879749-11879829)
chr8 (159-240)||(11897165-11897245)
chr8 (223-255)||(7262039-7262071)
chr8 (192-240)||(24056470-24056518)
[»] scaffold0016 (1 HSPs)
scaffold0016 (219-297)||(56203-56281)
[»] scaffold0603 (1 HSPs)
scaffold0603 (159-240)||(8859-8940)
[»] scaffold0182 (2 HSPs)
scaffold0182 (167-255)||(24530-24617)
scaffold0182 (222-293)||(24662-24733)
[»] scaffold0027 (1 HSPs)
scaffold0027 (159-255)||(133013-133108)
[»] scaffold0079 (1 HSPs)
scaffold0079 (219-293)||(14708-14782)
[»] scaffold0017 (2 HSPs)
scaffold0017 (227-297)||(38305-38375)
scaffold0017 (158-208)||(38475-38525)
[»] scaffold1178 (1 HSPs)
scaffold1178 (159-240)||(471-551)
[»] scaffold0061 (2 HSPs)
scaffold0061 (159-208)||(76257-76306)
scaffold0061 (229-297)||(76087-76155)
[»] scaffold2084 (1 HSPs)
scaffold2084 (219-293)||(101-175)
[»] scaffold0526 (1 HSPs)
scaffold0526 (219-293)||(8429-8503)


Alignment Details
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 18843990 - 18844066
Alignment:
Q  221 cgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  18843990 cgattttgattgcgattttacgagtcccgattttgctattccctttcgacctgaagtaaagttccgattttgacaac 18844066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 6852417 - 6852344
Alignment:
Q  224 ttttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||| ||||||||||||||    
T  6852417 ttttgattgcaattttatgagtcccgattttgctattccctttcgacctgaagtgaagtcccgattttgacaac 6852344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 41688522 - 41688444
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||| ||||||||||| ||||||||||||||  ||||||||||| ||| ||||||||| ||||||||||||||    
T  41688522 ttcgattttggttgcgattttaggagtcccgattttgctattccctttcgtcctaaagtaaagtcccgattttgacaac 41688444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 15051953 - 15051879
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||||||||||||||| ||||||||||||||  | ||| ||||||| ||||||||||| ||||||||||    
T  15051953 ttcgattttgattgcgattttacgagtcccgattttgctactccttttcgacttgaagtaaagtcccgattttga 15051879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 20321220 - 20321294
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||||||||||||   ||||| ||| ||||||||||||||| || |||||||||||    
T  20321220 attttgattgcgattttatgagtcccgattttactattcctttttgacctgaagtaaagtcccaattttgacaac 20321294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 41427692 - 41427770
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| ||||||||||||||  | |||||||||||  ||||||||||  |||||||||||||    
T  41427692 ttcgattttgattgcgattttacgagtcccgattttgctactccctttcgactcgaagtaaagtctcgattttgacaac 41427770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 15052081 - 15051989
Alignment:
Q  162 atgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| |||| |||| ||||    
T  15052081 atgactatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagttccgactttg 15051989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 19579216 - 19579292
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttg-aaattccctttcgacctgaagtaaagttccgattttgac 294  Q
    |||||||||||||||||||||||||||||| ||||||   | ||||||||||||||||||||| | |||||||||||    
T  19579216 ttcgattttgattgcgattttatgagtcccaattttgcttactccctttcgacctgaagtaaaatcccgattttgac 19579292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 22645583 - 22645500
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    ||||||||||||||| |||||| ||||| | ||||||  ||||||||| |||| ||||||||||||||| ||||||||| ||||    
T  22645583 ttcgattttgattgcaattttacgagtctcaattttgctattccctttagaccagaagtaaagttccgactttgacaaccttgc 22645500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 27340043 - 27339965
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||| | || |  ||||||||  |||||||||| || ||||||||||||||||||||||||||    
T  27340043 ttcgattttgattgcgatttcacgattttcgattttgctattccctttcaacttgaagtaaagttccgattttgacaac 27339965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 43235141 - 43235219
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||||||| | |||||||  ||||||||||| |  |||||||||| || |||||||||||    
T  43235141 ttcgattttgattgcgattttatgagtactgattttgctattccctttcgtctcgaagtaaagtcccaattttgacaac 43235219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 26021469 - 26021525
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaa 215  Q
    ||||||||||||||||||||||||||||| || | ||||||| ||||||||||||||    
T  26021469 tttatgactatatacaatttataacatatatttagcattattattgttttggtaaaa 26021525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 187865 - 187812
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||| ||||||| ||||||||||||||| || |||||||||||||||||||||    
T  187865 tttattactatatgcaatttataacatatatttaacattatttttgttttggta 187812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 19377749 - 19377798
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  19377749 tttatgactatatccaatttataacatatatttaacattatttttgtttt 19377798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 43005840 - 43005759
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||| | ||||||||||||||||||| || | ||||||||||||||||||| ||    |||||||| ||||||||||||    
T  43005840 tttatgagtgtatacaatttataacatatatttagcattatttttgttttggtacaatccatcgattttaattgcgatttta 43005759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 18051386 - 18051314
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgac 294  Q
    |||||||||||||||| ||  ||||||||||||   ||||||||||||||| ||||||| | |||||||||||    
T  18051386 gattttgattgcgattctacaagtcccgatttttctattccctttcgacctaaagtaaaatcccgattttgac 18051314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 24648165 - 24648245
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttt 239  Q
    |||||||||||||||||||||||| |||| || | |||||||| |||||| ||||||     |||||||||||||||||||    
T  24648165 tttatgactatatacaatttataatatatatttagcattatttatgttttagtaaaatccaccgattttgattgcgatttt 24648245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 297
Target Start/End: Complemental strand, 23172261 - 23172222
Alignment:
Q  258 attccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  23172261 attccctttcaacctgaagtaaagttccgattttgacaac 23172222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 41427555 - 41427608
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||||||||||| |||||||||| |||| || | |||||||||||||||||||    
T  41427555 tttatgactatatgcaatttataatatatatttatcattatttttgttttggta 41427608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 9996959 - 9996891
Alignment:
Q  164 gactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattg 232  Q
    |||||||  ||||||||||||||| || | ||||||||||||||||||||||    |||||||||||||    
T  9996959 gactataagcaatttataacatatattaagcattatttttgttttggtaaaatccatcgattttgattg 9996891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 29270325 - 29270379
Alignment:
Q  248 cgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    ||||||||| |||| |||| |||||||| |||| | |||||||||||||||||||    
T  29270325 cgattttgatattctcttttgacctgaaataaaatcccgattttgacaactttgc 29270379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 19579091 - 19579172
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||| ||| ||| ||||||||| ||    ||||||||| |||||||||||    |||||||||||||||||||||    
T  19579091 tttatgactatttaccattcataacatatatttggtattattttttttttggtaaaatccatcgattttgattgcgatttta 19579172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 23172408 - 23172328
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| |||| |||||||| || || |||| |||| ||| |||||||    |||||||||||||||||||||    
T  23172408 tttatgactatataccatttgtaacatatatttaatattaatttt-tttgggtaaaattcatcgattttgattgcgatttta 23172328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 293
Target Start/End: Original strand, 9169809 - 9169942
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttgaaa 258  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   |||||||||||||| |||||| | ||||| ||||||  |    
T  9169809 tttatgactatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcaattttacgggtcccaattttgcta 9169907  T
Q  259 ttccctttcgacctgaagtaaagttccgattttga 293  Q
     | ||||||||| ||||||||||||||||||||||    
T  9169908 cttcctttcgacttgaagtaaagttccgattttga 9169942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 19348689 - 19348784
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| ||||||||| ||||    
T  19348689 tttatgactatatgcaatttataacatatatttaacattatttttgttttggt-ataatcctcgattttgattgcgattttacgagtcccgaatttg 19348784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 29067555 - 29067627
Alignment:
Q  225 tttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||| |||||||||||| |||||||||  |||||| |||||||||||||||||||||||||||||||||    
T  29067555 tttgattgagattttatgagttccgattttgctattcccattcgacctgaagtaaagttccgattttgacaac 29067627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 39428184 - 39428260
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactt 299  Q
    |||||||||||||||||||||||||||||||||  |||||||||| |||  ||||||||| ||||||||||||||||    
T  39428184 attttgattgcgattttatgagtcccgattttgctattccctttcaaccgcaagtaaagtcccgattttgacaactt 39428260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 22355919 - 22355848
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    ||||||||||||||||||| ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||    
T  22355919 gattttgattgcgattttacgagtcccgattttgctattccatttcgacctgatgtaaagttccgattttga 22355848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 28746049 - 28746132
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    |||||||||||||||||||||| ||||||||||||||  |||  |||||||||||||||||||| || ||||||||||| ||||    
T  28746049 ttcgattttgattgcgattttacgagtcccgattttgctattttctttcgacctgaagtaaagtcccaattttgacaaccttgc 28746132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 24620053 - 24619975
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||  |||||| ||||||  ||||||||| ||| ||||||||||||||||||||||||||    
T  24620053 ttcgattttgattgcgattttacaagtcccaattttgctattcccttttgacttgaagtaaagttccgattttgacaac 24619975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 8592392 - 8592297
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||||||||||| ||   || ||||||||||||||||||| ||| ||||||||||    
T  8592392 tttatgactatatgcaatttataacatatatttatcattatttttgttttggtagaatcctt-gattttgattgcgattttacgagacccgattttg 8592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 8592255 - 8592172
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    |||||||||||||||||||||| ||||| ||||||||  ||| ||||||||| ||||||||||| ||||||| |||||| ||||    
T  8592255 ttcgattttgattgcgattttacgagtctcgattttgctatttcctttcgacttgaagtaaagtcccgatttcgacaaccttgc 8592172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 28135923 - 28135991
Alignment:
Q  172 acaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||| || | |||||||||| | ||||||    
T  28135923 acaatttataacatatgtttaacattatttttgttttggtaaaatatattgattttgattcctatttta 28135991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 20766758 - 20766679
Alignment:
Q  218 tttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||| ||||| ||||||||  | || |||||||  ||||||||||| ||||||||||||||    
T  20766758 tttcgattttgattgcgattttacgagtctcgattttgctactctctttcgagttgaagtaaagtcccgattttgacaac 20766679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 3041496 - 3041570
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||||||||||||||| ||||||||||||||  | ||| ||||||| ||||||||| | ||||||||||    
T  3041496 ttcgattttgattgcgattttacgagtcccgattttgctactccatttcgacttgaagtaaaatcccgattttga 3041570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 27676584 - 27676665
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||| |||||||||||||| || |||||| |||||||||||||||||    | ||||||||||| |||||||    
T  27676584 tttatgactatatataatttataacatatatttaacattgtttttgttttggtaaaatccattgattttgattgtgatttta 27676665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 6861120 - 6861036
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    |||||||||||| ||||||||||||||||  | | | ||||||||||||||||| ||    ||||||||||||||||||||||||    
T  6861120 tttatgactatagacaatttataacatatagttagctttatttttgttttggtagaatccatcgattttgattgcgattttatga 6861036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 30727714 - 30727654
Alignment:
Q  220 tcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaa 280  Q
    ||||||||||||||||||||| ||||| ||||||||  |||||||||| ||||||||||||    
T  30727714 tcgattttgattgcgattttaggagtctcgattttgctattccctttcaacctgaagtaaa 30727654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 22970945 - 22971031
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtc 246  Q
    ||||||||||||| ||||||||||||||| |  |||||||||||||||||||| | ||   |||||||||||||| |||||| |||||    
T  22970945 tttatgactatatgcaatttataacatatatataacattatttttgttttggt-agaatcctcgattttgattgcaattttacgagtc 22971031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 8560313 - 8560239
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||||||||||||| | ||||| ||||||||  | ||||||| ||| ||||||||||| ||||||||||    
T  8560313 ttcgattttgattgcgatttcacgagtctcgattttgctactcccttttgacttgaagtaaagtcccgattttga 8560239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 24649588 - 24649527
Alignment:
Q  236 ttttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||| ||||||| ||||||  ||||||||||||||||||||||||| || |||||||||||    
T  24649588 ttttacgagtcccaattttgctattccctttcgacctgaagtaaagtcccaattttgacaac 24649527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 15806352 - 15806226
Alignment:
Q  171 tacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgac 270  Q
    ||||||||||||||||| || | ||||||||||||||||||| ||    || ||| ||||| ||||| ||||| |  ||||||||   |||||||||||     
T  15806352 tacaatttataacatatatttagcattatttttgttttggtagaatccatcaattctgattacgattgtatgattttcgattttgcttttccctttcgag 15806253  T
Q  271 ctgaagtaaagttccgattttgacaac 297  Q
    |||||| ||| |  |||||||||||||    
T  15806252 ctgaagcaaaatctcgattttgacaac 15806226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 18014264 - 18014338
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||||||||||||||| ||||||| ||||||  | ||| |||  || ||||||||||| ||||||||||    
T  18014264 ttcgattttgattgcgattttacgagtcccaattttgctactccattttaacttgaagtaaagtcccgattttga 18014338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 22971082 - 22971118
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttg 255  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22971082 ttcgattttgattgcgattttacgagtcccgattttg 22971118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 27676708 - 27676792
Alignment:
Q  218 tttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    ||||||||||||||||||||||| || |  ||||||||   |||||||||||| ||||| ||| | | |||||| ||||||||||    
T  27676708 tttcgattttgattgcgattttaagattttcgattttgctcttccctttcgacttgaagcaaaatcctgattttaacaactttgc 27676792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 42696996 - 42697080
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||||||||||||| ||||||||||||| ||    ||| ||||| |||||||||||    |||||||||||||||| |||||||    
T  42696996 tttatgactatataccatttataacatatatttggtatttttttttttttggtaaaatccatcgattttgattgcgagtttatga 42697080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 19348830 - 19348889
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagt 282  Q
    |||||||||||||||||| ||||| ||||||||  | ||||||| ||| |||||||||||    
T  19348830 attttgattgcgattttacgagtctcgattttgctactcccttttgacttgaagtaaagt 19348889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 17064580 - 17064658
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| || |  |||||||||  ||  |||||||||||||| ||| | || |||||||||||    
T  17064580 ttcgattttgattgcgattttacgattgtcgattttgatcttttctttcgacctgaagcaaaatcccaattttgacaac 17064658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 20756294 - 20756332
Alignment:
Q  218 tttcgattttgattgcgattttatgagtcccgattttga 256  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  20756294 tttcaattttgattgcgattttacgagtcccgattttga 20756332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 10591789 - 10591834
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||| ||||||||||||||| || | |||||||||||||||||||    
T  10591789 tatatgcaatttataacatatatttagcattatttttgttttggta 10591834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 21553747 - 21553669
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactt 299  Q
    |||||||||||||||||||  |  ||||||||||||   | ||||||||||  ||||||||||| |||||||| |||||||    
T  21553747 ttcgattttgattgcgatt--accagtcccgatttttctactccctttcgatttgaagtaaagtcccgatttttacaactt 21553669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 39428051 - 39428132
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| | ||||||||||| || |  |||| |||| ||| |||||||    |||||||||||||||||||||    
T  39428051 tttatgactatatactacttataacatatatttagtattaattttttttgggtaaaatccatcgattttgattgcgatttta 39428132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 20766831 - 20766799
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttg 255  Q
    |||||||||| ||||||||||||||||||||||    
T  20766831 attttgattgtgattttatgagtcccgattttg 20766799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 7223788 - 7223866
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  7223788 ttcgattttgattgcaattttacgagtcccgattttgctattccctttcgacctgaagtaaagtcccgattttgacaac 7223866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 27890522 - 27890617
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| || | |||||||||||||||||| | || | ||||||||||||||||||||| |||||| |||||||    
T  27890522 tttatgactatatgcaatttataacatatatttagcattatttttgttttggt-agaattctcgattttgattgcgattttacgagtcctgattttg 27890617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 19748606 - 19748689
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    |||||||||||||||||||||| || |||||||||||  |||||||||| ||||||| |||||| |||||||||||||| ||||    
T  19748606 ttcgattttgattgcgattttacgaatcccgattttgctattccctttcaacctgaattaaagtcccgattttgacaaccttgc 19748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 302
Target Start/End: Complemental strand, 22498292 - 22498213
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    |||||||||||||||||| ||||||| ||||||  ||||||||||||||||||||||||| || ||||||||||| ||||    
T  22498292 attttgattgcgattttacgagtcccaattttgctattccctttcgacctgaagtaaagtcccaattttgacaaccttgc 22498213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 26053152 - 26053069
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    |||||||||||||| ||||||| ||||||| ||||||  ||| ||||||||||||||||||||| | |||||||||||||||||    
T  26053152 ttcgattttgattgggattttacgagtcccaattttgctatttcctttcgacctgaagtaaagtcctgattttgacaactttgc 26053069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 26073205 - 26073122
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    |||||||||||||| ||||||| ||||||| ||||||  ||| ||||||||||||||||||||| | |||||||||||||||||    
T  26073205 ttcgattttgattgggattttacgagtcccaattttgctatttcctttcgacctgaagtaaagtcctgattttgacaactttgc 26073122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 11327418 - 11327340
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| ||||| ||||||||  |||||||||| |||||||||||||  ||||||||||||||    
T  11327418 ttcgattttgattgcgattttacgagtctcgattttgctattccctttcaacctgaagtaaagccccgattttgacaac 11327340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 17543586 - 17543508
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||| |||||||||||||||||||||||  ||||| ||||||||||||||||||| || ||||| |||||    
T  17543586 ttcgattttgatttcgattttatgagtcccgattttgctattccttttcgacctgaagtaaagtcccaattttaacaac 17543508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 27233151 - 27233077
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||   |||||||||||||    
T  27233151 attttgattgcgattttatgagtcccgattttgtcattcccttttgacctgaagtaaaggctcgattttgacaac 27233077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 3573754 - 3573677
Alignment:
Q  221 cgattttgattgcgattttatgagtcccgattttgaaattcccttt-cgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  3573754 cgattttgattgcgattttacgagtcctgattttgctattcccttttcgacctgaagtaaagtcccgattttgacaac 3573677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 33593141 - 33593060
Alignment:
Q  162 atgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||||||| ||    ||||||||||||||||||||||||    
T  33593141 atgactatatgcaatttataacatatgtttaacattatttttcttttggtagaatccatcgattttgattgcgattttatga 33593060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 17103475 - 17103546
Alignment:
Q  226 ttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||| |||||| |||||||  ||||||||||||| ||||||||||| ||||||||||||||    
T  17103475 ttgattgcgattttacgagtcctgattttgttattccctttcgacttgaagtaaagtcccgattttgacaac 17103546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 7918206 - 7918128
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||| |||||| |||||| |||| ||  ||||||||||||||||||||||||  ||||||||||||||    
T  7918206 ttcgattttgattgcaattttacgagtcctgattctgctattccctttcgacctgaagtaaagccccgattttgacaac 7918128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 27614512 - 27614433
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaact 298  Q
    |||||||||||||| ||||||| |||||||||||||   ||||||||||||||||||||||| | |  ||||||||||||    
T  27614512 ttcgattttgattgtgattttacgagtcccgattttactattccctttcgacctgaagtaaattcctaattttgacaact 27614433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 31108431 - 31108504
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgaca 295  Q
    ||||||||||||| ||||| || || ||||||||  ||||||||||||||||||||||||| | ||||||||||    
T  31108431 gattttgattgcggttttacgaatctcgattttgctattccctttcgacctgaagtaaagtcctgattttgaca 31108504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 5422640 - 5422584
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaa 215  Q
    |||||||||||||| |||||||||||||| || | ||||||||||||||||||||||    
T  5422640 tttatgactatatataatttataacatatatttagcattatttttgttttggtaaaa 5422584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 15527966 - 15527903
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagt 282  Q
    |||||||||||||||||||||  |||| |||||||||  ||| |||||||||||||||||||||    
T  15527966 ttcgattttgattgcgattttccgagttccgattttgctatttcctttcgacctgaagtaaagt 15527903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 21354949 - 21355026
Alignment:
Q  220 tcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||| |||||| ||||||   |||||||||| || ||||||||| | || |||||||||||    
T  21354949 tcgattttgattgcgattttacgagtcctgatttttctattccctttcaacttgaagtaaaatcccaattttgacaac 21355026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 31407444 - 31407497
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    |||||||| |||| ||||||||||||||| || |||||||||||||||||||||    
T  31407444 tttatgacaatatgcaatttataacatatatttaacattatttttgttttggta 31407497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 20400067 - 20400015
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggt 211  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||||||||||    
T  20400067 tttatgactatatgcaatttataacatatatttatcattatttttgttttggt 20400015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 4841800 - 4841729
Alignment:
Q  169 tatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||| ||   |||  ||||||||||||||||| |  |||||||||||||||||||||    
T  4841800 tatacaatttataacatatattttgcatattttttgttttggtaaaatacatcgattttgattgcgatttta 4841729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 17250335 - 17250413
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    |||||||||||||||||| ||||||| |||  |  ||| ||||||||||||||||||||| |||||||||| ||| ||||    
T  17250335 attttgattgcgattttacgagtcccaattc-gccatttcctttcgacctgaagtaaagtcccgattttgataaccttgc 17250413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 18490614 - 18490539
Alignment:
Q  165 actatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||| ||||||||||||| || | ||||||||||| ||||||| ||    || ||||||||||||||||||    
T  18490614 actatatacgatttataacatatatttatcattatttttgatttggtagaatccatcaattttgattgcgatttta 18490539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 3573846 - 3573800
Alignment:
Q  194 cattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||||    |||||||||||||||||||||    
T  3573846 cattatttttgttttggtaaaactcatcgattttgattgcgatttta 3573800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 7621960 - 7621907
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||||||||||  |||||||||| |||| || | |||||||||||||||||||    
T  7621960 tttatgactataggcaatttataatatatatttatcattatttttgttttggta 7621907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 20432586 - 20432506
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| ||||||||||||||| || |  |||||||||||||||||  ||    |||||||||||||||| ||||    
T  20432586 tttatgactatatgcaatttataacatatatt-agtattatttttgttttggtggaatccatcgattttgattgcgaattta 20432506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 23897960 - 23898040
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || |  ||| ||||| |||||||||||    ||||||||||||| |||||||    
T  23897960 tttatgactatataccatttataacatatatttagtatt-ttttttttttggtaaaatccatcgattttgattgagatttta 23898040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 645422 - 645470
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttt 207  Q
    ||||||||||||| ||||||||||||||| || | ||||||| ||||||    
T  645422 tttatgactatatgcaatttataacatatatttagcattattattgttt 645470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 9770385 - 9770463
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||    
T  9770385 ttcgattttgattgcgattttacgagtcccgattttgctattccctttcgacctaaagtaaagtcccgattttgacaac 9770463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 24719723 - 24719804
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||    |||||||||||||||||||||    
T  24719723 tttatgactatatacaatttataacatatatttaacattatttttgctttggtaaaactcatcgattttgattgcgatttta 24719804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 18403680 - 18403758
Alignment:
Q  162 atgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttat 241  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| | ||  |||||||||||||||||||||||    
T  18403680 atgactatatacaatttataacatatatttaacattatttttgttttggt-agaatcttcgattttgattgcgattttat 18403758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 23064813 - 23064739
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||| |||| ||||||| |  ||||||||||||||||||||||||| ||||||||||||||    
T  23064813 attttgattgcgattttacgagttccgatttcgttattccctttcgacctgaagtaaagtcccgattttgacaac 23064739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 8011109 - 8011036
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||| |  |||||||||||||||||||||    
T  8011109 tatatacaatttataacatatatttagcattatttttgttttggtaaaatacatcgattttgattgcgatttta 8011036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 300
Target Start/End: Original strand, 8409730 - 8409870
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttgaaa 258  Q
    |||||||||||||  |||||||||||||| || | |||||||||||||||||| | ||   |||||||||||| ||||||||| | || | ||||||  |    
T  8409730 tttatgactatatgtaatttataacatatatttagcattatttttgttttggt-agaatcctcgattttgattacgattttataaatctcaattttgcta 8409828  T
Q  259 ttccctttcgacctgaagtaaagttccgattttgacaacttt 300  Q
     |||||||| || ||||||||||| |||||||||| ||||||    
T  8409829 ctccctttcaacttgaagtaaagtcccgattttgataacttt 8409870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 4157001 - 4157081
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||    |||||||||||||||||||||    
T  4157001 tttatcactatatacaatt-ataacatatattcaacattatttttgttttagtaaaatccatcgattttgattgcgatttta 4157081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 7045217 - 7045295
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||||| |   |||||||   |||||||||||||||||||||| |||| |||||||||||    
T  7045217 ttcgattttgattgcgattttatgatttttgattttgctcttccctttcgacctgaagtaaaattcctattttgacaac 7045295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 55476261 - 55476335
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||||||||||||||| |||| ||||||||   | ||||||||||| ||||||||||| ||||||||||    
T  55476261 ttcgattttgattgcgattttacgagtaccgattttattactccctttcgacttgaagtaaagtcccgattttga 55476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 6346928 - 6346855
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||| || | |||||||||||||||||| |||    |||||||||||||||||||||    
T  6346928 tatatacaatttataacatatatttatcattatttttgttttggtgaaatccatcgattttgattgcgatttta 6346855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 7044911 - 7044984
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattg 232  Q
    ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||    |||||||||||||    
T  7044911 tttatcactatatacaaattataacacatgtttaacattatttttgttttggtaaaatccatcgattttgattg 7044984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 9149704 - 9149624
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttt 239  Q
    ||||| ||||||||||||||||||||||| || | |||||||||| |||||||||||  | || |||||||||||| ||||    
T  9149704 tttataactatatacaatttataacatatatttagcattatttttcttttggtaaaatctatcaattttgattgcgttttt 9149624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 55476124 - 55476219
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| ||   |||||||||||||||||| | ||   ||||||||||||||||||||| |||| |||| ||||    
T  55476124 tttatgactatatgcaatttataacatatattttgcattatttttgttttggt-agaatcctcgattttgattgcgattttacgagttccgactttg 55476219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 36121095 - 36121174
Alignment:
Q  218 tttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||| |||||||| |||||||||||  |  |||||||||| || ||||||||||  ||||||||||||||    
T  36121095 tttcgattttgattccgattttacgagtcccgattaagctattccctttcaacttgaagtaaagacccgattttgacaac 36121174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 5375938 - 5376016
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| |||||||||||||   |||   ||| ||||||||||||||| || |||||||||||    
T  5375938 ttcgattttgattgcgattttacgagtcccgattttactatttatttttgacctgaagtaaagtcccaattttgacaac 5376016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 6346811 - 6346733
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||| ||||||| || |  ||||||||   |||||||||||||||||| ||| ||||||||||||||||    
T  6346811 ttcgattttgattgtgattttacgattttcgattttgctcttccctttcgacctgaagcaaatttccgattttgacaac 6346733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 7045090 - 7045144
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaa 213  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  7045090 tttatcactatatacaaattataacatatatttaacattatttttgttttggtaa 7045144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 8020778 - 8020729
Alignment:
Q  163 tgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  8020778 tgactatatgcaatttataacatatatttaacattatttttgttttggta 8020729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 8010992 - 8010946
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctt 265  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||    
T  8010992 ttcgattttgattgcgattttacgagtcccgattttgctattccctt 8010946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 5846099 - 5846050
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    |||||||| |||||||||||||||||||| || | |||||||||||||||    
T  5846099 tttatgacaatatacaatttataacatatatttagcattatttttgtttt 5846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 10394768 - 10394813
Alignment:
Q  168 atatacaatttataacatatgttcaacattatttttgttttggtaa 213  Q
    |||||||||||||||||||| || | ||||||||||||||||||||    
T  10394768 atatacaatttataacatatatttaccattatttttgttttggtaa 10394813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 9911267 - 9911191
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgaca 295  Q
    |||| |||| |||||||||||| |||||||||||||   ||||||||||||  ||||||||||| |  |||||||||    
T  9911267 ttcgttttttattgcgattttacgagtcccgattttactattccctttcgatatgaagtaaagtcctaattttgaca 9911191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 13551528 - 13551465
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagt 282  Q
    ||||||||| |||||||||||| |||||  |||||||  ||||| |||||||| ||||||||||    
T  13551528 ttcgattttaattgcgattttacgagtcttgattttgctattccttttcgaccagaagtaaagt 13551465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 8743758 - 8743708
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttg 209  Q
    |||||||||||  |||||||| ||||||| || ||||||||||||||||||    
T  8743758 tttatgactatgaacaatttaaaacatatatttaacattatttttgttttg 8743708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 8367475 - 8367512
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttga 256  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  8367475 ttcgattttgattgcaattttacgagtcccgattttga 8367512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 13023838 - 13023903
Alignment:
Q  226 ttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgatttt 291  Q
    ||||||| ||||||| |||| |||||||||  |||| |||||||| ||||||||||| || |||||    
T  13023838 ttgattgtgattttacgagttccgattttgctattctctttcgacttgaagtaaagtcccaatttt 13023903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 17466228 - 17466308
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || || ||||||||| || | ||||||    |||||||||||||| ||||||    
T  17466228 tttatgactatataccatttataacatatatttaatattattttt-ttgttgtaaaatccatcgattttgattgcaatttta 17466308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 5884274 - 5884190
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    |||||||| |||| ||||||||||||||  || | ||||| ||||||||| ||||||    || |||||||||| ||||||||||    
T  5884274 tttatgacaatatgcaatttataacatacttttagcattacttttgtttttgtaaaatccatctattttgattgtgattttatga 5884190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 9954902 - 9954816
Alignment:
Q  206 tttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttg 292  Q
    ||||||||||   |||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  9954902 tttggtaaaatccttcgattttgattgcgattttacgagtcccgattttgctattccctttcgaccttaagtaaagttccgattttg 9954816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 16125311 - 16125233
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| ||||||| |||||   |||||||||||||||||||||||||||||||||| |||||    
T  16125311 ttcgattttgattgcgattttacgagtcccaattttactattccctttcgacctgaagtaaagttccgattttaacaac 16125233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 21846130 - 21846052
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||||| |||||||| | ||||||||||||    
T  21846130 ttcgattttgattgcgattttaagagtcccgattttgctattccctttcgacctggagtaaagtcctgattttgacaac 21846052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 12002852 - 12002757
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||||||||||| ||   || ||||||||||||||||||| ||||||||||||||    
T  12002852 tttatgactatatgcaatttataacatatatttagcattatttttgttttggtagaatcctt-gattttgattgcgattttacgagtcccgattttg 12002757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 13100466 - 13100546
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    ||||||||||||||||||| |||| |||||||||  ||||||||||||| ||||||||||| |||||||||||||| ||||    
T  13100466 gattttgattgcgattttacgagttccgattttgccattccctttcgacttgaagtaaagtcccgattttgacaaccttgc 13100546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 14074339 - 14074261
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||| |||||||||||| || ||||||  ||||||||||||||||||||||||| | ||||||||||||    
T  14074339 ttcgattttgattgtgattttatgagttccaattttgctattccctttcgacctgaagtaaagtcctgattttgacaac 14074261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 9351917 - 9351841
Alignment:
Q  221 cgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||| ||||||||||||||  |||| ||||||||||||||||||||   ||||||||||||    
T  9351917 cgattttgattgcgattttacgagtcccgattttgctattcgctttcgacctgaagtaaagtcttgattttgacaac 9351841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 17055775 - 17055698
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| |||||||||||||  ||| |||||||||||| ||||||||  ||||||||||||||    
T  17055775 ttcgattttgattgcgattttacgagtcccgattttacaatcccctttcgacct-aagtaaagacccgattttgacaac 17055698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 25146624 - 25146546
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| || | |||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  25146624 ttcgattttgattgcgattttacgatttccgattttgctattccctttcaacctgaagtaaagtcctgattttgacaac 25146546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 17197521 - 17197427
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| |||||| |||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| ||||||||| ||||    
T  17197521 tttatgactatatgcaatttgtaacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgatttta-gagtcccgactttg 17197427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 19009801 - 19009741
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagt 282  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||| ||||||||||||    
T  19009801 gattttgattgcgattttacgagtcccgattttgctattccctttcgatctgaagtaaagt 19009741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 17197385 - 17197311
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||  ||||||||||| |||| |||||||||  | ||||||||||| ||||||||||| ||||||||||    
T  17197385 ttcgattttagttgcgattttacgagttccgattttgctactccctttcgacttgaagtaaagtcccgattttga 17197311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 17869603 - 17869529
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaa 296  Q
    ||||||||||||||||||| | ||||||||||||   |||||||| |||||||| || ||| |||||||||||||    
T  17869603 gattttgattgcgattttacgtgtcccgattttgctcttcccttttgacctgaattagagtcccgattttgacaa 17869529  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 23528929 - 23529007
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| |||||||||| ||    |||| |||  ||||||| |||||||||||||||||||||    
T  23528929 ttcgattttgattgcgattttacgagtcccgatcttactgttcctttttaacctgaaataaagttccgattttgacaac 23529007  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 8773437 - 8773498
Alignment:
Q  192 aacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgatttt 254  Q
    ||||||||||||||||||||| ||   | ||||||| ||||||||||||||||||||||||||    
T  8773437 aacattatttttgttttggtagaatcct-cgatttttattgcgattttatgagtcccgatttt 8773498  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 9954824 - 9954774
Alignment:
Q  247 ccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||  ||||||||||||||| ||||||||| ||||||||||||||    
T  9954824 ccgattttgctattccctttcgaccttaagtaaagtcccgattttgacaac 9954774  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 18891575 - 18891497
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatt 237  Q
    ||||||||||| || ||||||||| |||| || ||||||||||| ||||||||||||    || |||||||||||||||    
T  18891575 tttatgactatctataatttataatatatatttaacattattttcgttttggtaaaattcatcaattttgattgcgatt 18891497  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 42179927 - 42179849
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| ||||  ||||| ||  |||||||||  ||| |||||||| ||| ||||||||||||    
T  42179927 ttcgattttgattgcgattttacgagtttcgattatgctattcccttttaacccgaagtaaatttctgattttgacaac 42179849  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 13276114 - 13276038
Alignment:
Q  217 atttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaa 296  Q
    |||| |||| |||||||||||||| |||||| |||||||  |||| |||||||||   |||||||| |||||||||||||    
T  13276114 attttgattctgattgcgattttacgagtcctgattttgctattctctttcgacc---agtaaagtcccgattttgacaa 13276038  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 9955015 - 9954933
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttg-gtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| ||||  |||||| || ||||| ||||||    ||||| |||||||||||||||    
T  9955015 tttatgactatataccatttataacatatattcagtattattatttttttgtgtaaaatccatcgatcttgattgcgatttta 9954933  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 27502211 - 27502133
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||| |||||||||||| || |||||  ||||  | | ||| ||||||||| | ||||||||||||||    
T  27502211 ttcgattttgattgcaattttatgagtctcggttttgctattctatgttgacttgaagtaaattcccgattttgacaac 27502133  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 9321591 - 9321530
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaa 280  Q
    |||||||||||||||||||||| |||| |||||||||  |||   |||| ||||||||||||    
T  9321591 ttcgattttgattgcgattttacgagttccgattttgctattttttttctacctgaagtaaa 9321530  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 17055896 - 17055819
Alignment:
Q  161 tatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||| |||||||| ||||| |  | ||||||||||||||||||||||    || ||||||||||| ||||||    
T  17055896 tatgactatatataatttatagcatattt--agcattatttttgttttggtaaaatccatccattttgattgcaatttta 17055819  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 18304631 - 18304591
Alignment:
Q  262 cctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    |||||||||||||||| |||| |||||||||||||| ||||    
T  18304631 cctttcgacctgaagtgaagtcccgattttgacaaccttgc 18304591  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 5395503 - 5395430
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattg 232  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||||||    
T  5395503 tttatgactatatacaatttataacatattttgaacattatttttgttttggtaaaatctttcgattttgattg 5395430  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 19262173 - 19262094
Alignment:
Q  218 tttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||| |||||| ||||||||||||||||||| ||||||    
T  19262173 tttcgattttgattgcgattttacgagtcccgattttgctattcccattcgacttgaagtaaagttccgatttcgacaac 19262094  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 974474 - 974564
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccga 250  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| |||||||||    
T  974474 tttatgactatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtcccga 974564  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 20063996 - 20064074
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| ||||| ||||||||  |||||||||| |||||||||||||  ||||||||||||||    
T  20063996 ttcgattttgattgcgattttacgagtctcgattttgctattccctttcaacctgaagtaaagccccgattttgacaac 20064074  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 30433088 - 30433166
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||||||||||||||||   ||| | |||||||||||||||| || ||||||||||||||    
T  30433088 ttcgattttgattgcgattttatgagtcccgatttttctattgcttttcgacctgaagtaatgtcccgattttgacaac 30433166  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 20034215 - 20034120
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||| ||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| ||||||||| ||||    
T  20034215 tttatgagtatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtcccgactttg 20034120  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 21869177 - 21869102
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgac 294  Q
    ||||||||| |||||||||||| |||||||||||||   ||||||||||||| ||||||||||| |||||||||||    
T  21869177 ttcgattttaattgcgattttaagagtcccgatttttctattccctttcgacttgaagtaaagtcccgattttgac 21869102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 27523952 - 27523881
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattt 290  Q
    |||||||||||||||||||||| ||||||||||||||  | ||||||||||| ||||||||||| |||||||    
T  27523952 ttcgattttgattgcgattttacgagtcccgattttgctactccctttcgacttgaagtaaagtcccgattt 27523881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 41002161 - 41002259
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttgaaa 258  Q
    ||||||||||||| ||||||||||||||| || | |||||||||||||||||| | ||   |||||||||||| |||||||| |||| ||||||||||||    
T  41002161 tttatgactatatgcaatttataacatatatttagcattatttttgttttggt-agaatcctcgattttgattacgattttacgagttccgattttgaaa 41002259  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 1405056 - 1405134
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||| ||||| || ||||||  |||||||||||||    
T  1405056 ttcgattttgattgcgattttatgagtaccgattttgctattcccttttgacctaaattaaagtctcgattttgacaac 1405134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 20034074 - 20033996
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttg 301  Q
    |||||||||||||||||| ||||| ||||||||  | ||||||||||| ||||||||||| |||||||||| |||||||    
T  20034074 attttgattgcgattttacgagtctcgattttgctactccctttcgacttgaagtaaagtcccgattttgataactttg 20033996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 25538997 - 25538923
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||| ||| |||||||||   ||||||||||||||||| ||||||| ||||||||||||||    
T  25538997 attttgattgcgattttacgagacccgatttttctattccctttcgacctgatgtaaagtaccgattttgacaac 25538923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 34578039 - 34578120
Alignment:
Q  173 caatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| ||||||||||||||    
T  34578039 caatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtcccgattttg 34578120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 25539126 - 25539045
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||||||| |||||||||| || | |||||||| |||||||||||||  | |||||||||||||| ||||||    
T  25539126 tttatgactatatacaatatataacatatatttagcattatttctgttttggtaaaatctatcgattttgattgcaatttta 25539045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 31023450 - 31023534
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||| |||||||||||    |||||||||||| |||||||||||    
T  31023450 tttatgactatttactatttataacatatatttaacattatttttattttggtaaaatccatcgattttgattacgattttatga 31023534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 16766934 - 16767014
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||| |||||||||||||||| || || | |||||||||||||||||||||   ||| |||||||||||||||||||    
T  16766934 tttatgactgtatacaatttataacaaatatttagcattatttttgttttggtaaatccttt-gattttgattgcgatttta 16767014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 31237832 - 31237755
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaa 296  Q
    |||||| ||||||||||||||| |||||||||||||   ||||||||| || |||||||||||| | |||||||||||    
T  31237832 ttcgatattgattgcgattttacgagtcccgattttactattcccttttgaactgaagtaaagtcctgattttgacaa 31237755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 7301923 - 7302018
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    |||||||| |||| ||||||||||||||| || |||||||||||| ||||||| | ||   ||||||||||||||||||||  ||||||||| ||||    
T  7301923 tttatgaccatatgcaatttataacatatatttaacattatttttattttggt-agaatcctcgattttgattgcgattttgcgagtcccgactttg 7302018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 21869314 - 21869219
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| || | ||| |||||||||||||| | ||   ||||||||||||| ||||||| ||||| ||||||||    
T  21869314 tttatgactatatgcaatttataacatatatttagcataatttttgttttggt-agaatcatcgattttgattgggattttacgagtctcgattttg 21869219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 27524089 - 27523994
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||| ||||| |||||||||| |||| || |||||||||||||||||||| | ||   |||||||||||||| |||||| ||||||||| ||||    
T  27524089 tttatgaatatatgcaatttataatatatatttaacattatttttgttttggt-agaaccctcgattttgattgcaattttacgagtcccgactttg 27523994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 1690708 - 1690628
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| |||||||| |||| || || |||||| || |||||||||||  | |||||||||||||||||||||    
T  1690708 tttatgactatataccatttataaaatatatttaatattattatt-ttttggtaaaatttatcgattttgattgcgatttta 1690628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 13502638 - 13502573
Alignment:
Q  175 atttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| || || |||||||||||||||||||||    |||||||||||||||||||||    
T  13502638 atttataacatatatttaatattatttttgttttggtaaaatccatcgattttgattgcgatttta 13502573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 34841729 - 34841810
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||||| | || ||    |||||||||||||||||||||    
T  34841729 tttatgactatatacaatttataacatatatttattattatttttgtttggatagaatccatcgattttgattgcgatttta 34841810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 27406939 - 27407023
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||| |||||||||| ||||||| |||| || | |||||||||||||||||| |||    || |||||||||||||||||||||    
T  27406939 tttattactatatacagtttataatatatatttagcattatttttgttttggtgaaatccatcaattttgattgcgattttatga 27407023  T

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Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 974611 - 974686
Alignment:
Q  219 ttcgattttgattgcgattttatgag-tcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||||||||||||||| ||| | |||||||||  | ||||||||||| ||||||||||| ||||| ||||    
T  974611 ttcgattttgattgcgattttacgagtttccgattttgctactccctttcgacttgaagtaaagtcccgatattga 974686  T

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Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 7302055 - 7302129
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    ||||||||||||||| |||||| ||||||||||||||  |  ||| ||| || ||||||||||| ||||||||||    
T  7302055 ttcgattttgattgcaattttacgagtcccgattttgctaccccccttcaacttgaagtaaagtcccgattttga 7302129  T

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Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 19492080 - 19492162
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatt-tttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||||||||||| || | ||||||| ||| |||||||||||    |||||||||||| || |||||    
T  19492080 tttatgactatatacaatttataacatatatttagcattattattttttttggtaaaatccatcgattttgattacggtttta 19492162  T

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Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 26251663 - 26251745
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttg-ttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||| |||||||| ||  |  ||||||||||||| ||||||    
T  26251663 tttatgactatatgcaatttataacatatatttaccattatttttgattttggtagaatctaccgattttgattgcaatttta 26251745  T

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Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 34578166 - 34578198
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttg 255  Q
    |||||||||||||||||||||||||||||||||    
T  34578166 attttgattgcgattttatgagtcccgattttg 34578198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 35565934 - 35565854
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||||||||||||||||||||||||||| ||    | ||||||| |||||||||||    ||||||||||||| ||||||||||    
T  35565934 tttatgactatatacaatttataacatatatt---tagtattttt-ttttggtaaaatccatcgattttgattgtgattttatga 35565854  T

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Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 8428370 - 8428423
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    |||||||||||||| ||||||||| ||||  | | |||||||||||||||||||    
T  8428370 tttatgactatatataatttataatatatagttagcattatttttgttttggta 8428423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 19519530 - 19519603
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||| ||||||||||||||| || | ||||||||| ||||| ||| ||  | || ||||||||||||||||||    
T  19519530 tatatgcaatttataacatatatttagcattattttggtttttgtagaatctatcaattttgattgcgatttta 19519603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 19245865 - 19245945
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgc 302  Q
    ||||||||||||||||||| || |   |||||||  |||||||||| || ||||| ||| | |||||||||||||| ||||    
T  19245865 gattttgattgcgattttacgatttttgattttgctattccctttcaacttgaagcaaaatcccgattttgacaaccttgc 19245945  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 17811620 - 17811699
Alignment:
Q  218 tttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||| || |||||||||||  ||||||||| ||||||||||||||| ||||||||||||||    
T  17811620 tttcgattttgattgcgattttacgaatcccgattttgctattcccttttgacctgaagtaaagtcccgattttgacaac 17811699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 24989630 - 24989552
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||| |||||| ||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||    
T  24989630 ttcgattttgattgccattttacgagtcccgattttgttattccctttcgacctaaagtaaagtcccgattttgacaac 24989552  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 8254096 - 8253977
Alignment:
Q  162 atgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttgaaattc 261  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| ||||| ||||||||  | ||    
T  8254096 atgactatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtctcgattttgctactc 8253998  T
Q  262 cctttcgacctgaagtaaagt 282  Q
    ||||||||  | |||||||||    
T  8253997 cctttcgatttaaagtaaagt 8253977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 25842724 - 25842629
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| ||||||||| ||||    
T  25842724 tttatgactatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtcccgactttg 25842629  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 20570742 - 20570663
Alignment:
Q  218 tttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||| |||||||||||||||||||||||| | ||||||  |||||||||| |||||||||| ||| ||||||||||||||    
T  20570742 tttcaattttgattgcgattttatgagtctcaattttgttattccctttcaacctgaagtagagtcccgattttgacaac 20570663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 23618422 - 23618327
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| |||||||||| |||| || |||||||||||||||||||| | ||   |||||||||||| |||||||| ||||||||| ||||    
T  23618422 tttatgactatatgcaatttataatatatatttaacattatttttgttttggt-agaatcctcgattttgattacgattttacgagtcccgactttg 23618327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 5058801 - 5058879
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||| |||||| || | |||||||||  ||||||||| || |||||||||||| ||||||||||||||    
T  5058801 ttcgattttgattgcaattttacgaattccgattttgctattcccttttgatctgaagtaaagtcccgattttgacaac 5058879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 25842583 - 25842513
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||||||||||| ||||||||||||||  | ||||||||||| ||||||||||| || |||||||    
T  25842583 attttgattgcgattttacgagtcccgattttgctactccctttcgacttgaagtaaagtcccaattttga 25842513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 44944701 - 44944623
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||| |||||||||||| ||||||||  ||||  ||| |||||||| |||||||||||| ||||||||||||||    
T  44944701 ttcgattttaattgcgattttacgagtcccgcatttgctatttcctttcgatctgaagtaaagtcccgattttgacaac 44944623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 26565528 - 26565448
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    || ||||||||||| ||||||    
T  26565528 tttatgactatatacagtttataacatatatt-aacattatttttgttttggtaaaatccatcaattttgattgcaatttta 26565448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 1981316 - 1981221
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| || | |||||||||||||||| | | ||   |||||||||||||| |||||| ||||||||| ||||    
T  1981316 tttatgactatatgcaatttataacatatatttagcattatttttgttttgat-agaatcctcgattttgattgcaattttacgagtcccgactttg 1981221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 11326547 - 11326634
Alignment:
Q  210 gtaaaaaatttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||| | ||| |||||||||| ||||||| ||||||| ||||||  |||| ||||| ||||||| |||||||| ||||||||||||    
T  11326547 gtaaaatacttcaattttgattgtgattttaagagtcccaattttgctattctctttccacctgaaataaagttctgattttgacaac 11326634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 8304359 - 8304437
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||| ||||||| ||||| ||||||||  | || |||||||| |||||||||||  |||||||||||||    
T  8304359 ttcgattttgattgtgattttacgagtcgcgattttgctactctctttcgacttgaagtaaagtctcgattttgacaac 8304437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 7307147 - 7307226
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||| |||||||| ||||||||| ||||| || |||||||||||||||||||| | ||  ||||||||||||||||||||||    
T  7307147 tttacgactatatgcaatttata-catatatttaacattatttttgttttggt-agaatcttcgattttgattgcgatttta 7307226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 17809108 - 17809027
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||| ||||| ||||||||||||||| || | ||||||||||||||||||| ||  | |  ||||||||||||||||||    
T  17809108 tttatgattatatgcaatttataacatatatttagcattatttttgttttggtagaatctatgaattttgattgcgatttta 17809027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 5715559 - 5715632
Alignment:
Q  220 tcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||| |||||||||||||   ||| |||||||||    |||||||| ||||||||||||||    
T  5715559 tcgattttgattgcgattttacgagtcccgatttttctatttcctttcgac----agtaaagtcccgattttgacaac 5715632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 4247635 - 4247706
Alignment:
Q  225 tttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaa 296  Q
    |||||||||||||||| || |||| |||||   ||||||||||||| ||||||||||| || ||||||||||    
T  4247635 tttgattgcgattttacgaatcccaatttttgtattccctttcgacttgaagtaaagtcccaattttgacaa 4247706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 4574879 - 4574946
Alignment:
Q  173 caatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| || | |||||||||| |||||||||||  | |||||||||| ||||||||||    
T  4574879 caatttataacatatattaagcattatttttattttggtaaaatctatcgattttgactgcgatttta 4574946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 8304220 - 8304317
Alignment:
Q  159 tttatgactatatacaatttataac--atatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| |||||||||||  |||| || || ||||||||||||||||| | ||   |||||||||||||| ||||||||||| || ||||||    
T  8304220 tttatgactatatgcaatttataacatatatttttaaaattatttttgttttggt-agaatcctcgattttgattgcaattttatgagttccaattttg 8304317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 27221687 - 27221762
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacct-gaagtaaagttccgattttga 293  Q
    |||||||||||||||||||||| || |||||||||||  || | ||||||||||  ||||||||| ||||||||||    
T  27221687 ttcgattttgattgcgattttacgaatcccgattttgctatactctttcgacctaaaagtaaagtcccgattttga 27221762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 30294404 - 30294475
Alignment:
Q  169 tatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||    |||| |||||||| |||||||    
T  30294404 tatacaatttataacatatatttaacattatctttgttttggtaaaatccatcgagtttgattgtgatttta 30294475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 1981181 - 1981107
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    ||||||||||||| |||||||| |||| || |||||   | ||||||||||| ||||||||||| ||||||||||    
T  1981181 ttcgattttgattacgattttacgagttccaatttttctaatccctttcgacttgaagtaaagtcccgattttga 1981107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 44944825 - 44944745
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || |  |||||| || ||||||||||   | |||||||||||||||||||||    
T  44944825 tttatgactatataccatttataacatatatttagtattattatt-ttttggtaaagtctatcgattttgattgcgatttta 44944745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 9685150 - 9685087
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagt 282  Q
    ||||||||| |||||||||||| |||||  |||||||  ||||| |||||||| ||||||||||    
T  9685150 ttcgattttaattgcgattttacgagtcttgattttgctattccttttcgaccagaagtaaagt 9685087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 23618285 - 23618222
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagt 282  Q
    |||||||||||||||||||||  ||||||||||||||  | |||||||| || | |||||||||    
T  23618285 ttcgattttgattgcgattttcggagtcccgattttgctactccctttcaacttaaagtaaagt 23618222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 8572409 - 8572493
Alignment:
Q  218 tttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttgca 303  Q
    ||||||||||||||||||||| | ||||||| || ||   ||||||||||||| |||  |||||| || ||||||||||| |||||    
T  8572409 tttcgattttgattgcgatttaa-gagtcccaatattactattccctttcgacttgagataaagtcccaattttgacaaccttgca 8572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 8629581 - 8629512
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgatttt 291  Q
    |||| |||||||| ||||||||||||| |||||   |||||||||| |||| |||| |||| ||||||||    
T  8629581 gattgtgattgcgtttttatgagtcccaattttactattccctttcaacctaaagtgaagtcccgatttt 8629512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 4247505 - 4247588
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||||||||||||  |||| |||||||| || |  ||||||||| ||| |||||||    ||||||||||||||||||||||||    
T  4247505 tttatgactatatatcatttgtaacatatatttagtattattttt-tttaggtaaaatccatcgattttgattgcgattttatga 4247588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 8718 - 8788
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||||||||||| |||| |||||||||  ||||||||||||||||||||||||| ||||||||||    
T  8718 attttgattgcgattttacgagttccgattttgttattccctttcgacctgaagtaaagtcccgattttga 8788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 45403302 - 45403379
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaa 296  Q
    |||||||||||||||||||||| ||||| ||||||||  ||||||||||||| |||| |||||| |||||||||||||    
T  45403302 ttcgattttgattgcgattttacgagtctcgattttgctattccctttcgacgtgaaataaagtcccgattttgacaa 45403379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 11879873 - 11879951
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| |||| ||||||||   ||||||||| ||||||||||||| | ||||||||||||||    
T  11879873 ttcgattttgattgcgattttacgagttccgattttactattcccttttgacctgaagtaaaatcccgattttgacaac 11879951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 11897289 - 11897367
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| |||| ||||||||   ||||||||| ||||||||||||| | ||||||||||||||    
T  11897289 ttcgattttgattgcgattttacgagttccgattttactattcccttttgacctgaagtaaaatcccgattttgacaac 11897367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 15761332 - 15761258
Alignment:
Q  166 ctatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||||||||||| || | ||||||||||||||||||||||    |||||||||||||||||||||    
T  15761332 ctatatacaatttataacatatatttagcattatttttgttttggtaaaatccatcgattttgattgcgatttta 15761258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 24414143 - 24414065
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||||| |||||   ||||||  ||||||||||||| |||||||||||||| |||||||||||    
T  24414143 ttcgattttgattgcgattttacgagtctaaattttgctattccctttcgacatgaagtaaagttccaattttgacaac 24414065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 40541677 - 40541602
Alignment:
Q  218 tttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||| |||||||||||||||||| ||||||||||||||  | | ||||||||| ||||||||||| ||||||||||    
T  40541677 tttcaattttgattgcgattttacgagtcccgattttgctacttcctttcgacttgaagtaaagtcccgattttga 40541602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 2040392 - 2040474
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaactttg 301  Q
    |||||||||||||||||||||| |||| |||||||||  | || |||||||| ||||||||||| |||||||| | |||||||    
T  2040392 ttcgattttgattgcgattttacgagttccgattttgctactctctttcgacttgaagtaaagtcccgattttcataactttg 2040474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 5922321 - 5922399
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||| ||   || | |||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  5922321 ttcgattttgattgcgattgtacatgttctgattttgctattccctttcgacctgaagtaaagtcccgattttgacaac 5922399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 16752296 - 16752370
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||| ||||||||||| ||||||| ||||||  | ||||||||||| |||||||||||||| |||||||    
T  16752296 ttcgattttgtttgcgattttacgagtcccaattttgctactccctttcgacttgaagtaaagttccaattttga 16752370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 40541814 - 40541718
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattat-ttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| || |||||||| ||||||||||||  ||   || ||||||||||||||||||| ||||||||| ||||    
T  40541814 tttatgactatatgcaatttataacatatatttaacattattttttgttttggttgaatcctt-gattttgattgcgattttacgagtcccgactttg 40541718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 1018162 - 1018082
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttt 239  Q
    |||||||||||||| |||||||||||||  || |||||||||||| |||||||| ||  | ||||||||||||||| ||||    
T  1018162 tttatgactatatataatttataacatacatttaacattatttttattttggtagaatctatcgattttgattgcgctttt 1018082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 7489137 - 7489061
Alignment:
Q  221 cgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    |||||||||||||||||||| ||||||  ||||||  ||| ||||||||| ||||||||||| | ||||||||||||    
T  7489137 cgattttgattgcgattttacgagtcctaattttgctatttcctttcgacttgaagtaaagtcctgattttgacaac 7489061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 19704310 - 19704252
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaa 280  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||| ||| |||||||||    
T  19704310 gattttgattgcgattttacgagtcccgattttgctattccctttggacttgaagtaaa 19704252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 16752159 - 16752208
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  16752159 tttatgactatatgcaatttataacatatatttaacattatttttgtttt 16752208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 3094223 - 3094143
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttt 239  Q
    ||||||||||||||| ||||||||||||| || |  ||| ||||| |||| ||||||  | || |||||||||||||||||    
T  3094223 tttatgactatataccatttataacatatatttagtattttttttttttttgtaaaatctatcaattttgattgcgatttt 3094143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 15294942 - 15294977
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgatttt 254  Q
    |||||||||||||||||||||| |||||||||||||    
T  15294942 ttcgattttgattgcgattttaggagtcccgatttt 15294977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 15475311 - 15475346
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgatttt 254  Q
    |||||||||||||||||||||| |||||||||||||    
T  15475311 ttcgattttgattgcgattttaggagtcccgatttt 15475346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 45403178 - 45403253
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcg 234  Q
    |||||||  |||||| ||||||||||||| || || |||||| || |||||||||||  | |||||||||||||||    
T  45403178 tttatgataatataccatttataacatatatttaatattattatttttttggtaaaatctatcgattttgattgcg 45403253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 17647270 - 17647348
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||||| |  ||||||||    || |||||||||||||| ||| | |||||||| |||||    
T  17647270 ttcgattttgattgcgattttatgattgtcgattttgctcatctctttcgacctgaagcaaaatcccgattttaacaac 17647348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 8582203 - 8582264
Alignment:
Q  171 tacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattg 232  Q
    |||||| |||||||||| || |||||||||| |||||||||||||    |||||||||||||    
T  8582203 tacaatgtataacatatatttaacattatttatgttttggtaaaattcatcgattttgattg 8582264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 11879749 - 11879829
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || |  |||||| || |||||||||||    |||||||||| ||||||||||    
T  11879749 tttatgactatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgattttgaatgcgatttta 11879829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 11897165 - 11897245
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || |  |||||| || |||||||||||    |||||||||| ||||||||||    
T  11897165 tttatgactatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgattttgaatgcgatttta 11897245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 7262039 - 7262071
Alignment:
Q  223 attttgattgcgattttatgagtcccgattttg 255  Q
    |||||||||||||||||| ||||||||||||||    
T  7262039 attttgattgcgattttacgagtcccgattttg 7262071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 24056518 - 24056470
Alignment:
Q  192 aacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||||||| |||||  | |||||| ||||||||||||||    
T  24056518 aacattatttttgttttgataaaatctatcgattatgattgcgatttta 24056470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 56281 - 56203
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||||||||||||||||||   ||| ||||||||  |||||||||||||||||||||||||  |||||||||||||    
T  56281 ttcgattttgattgcgattttagatgtctcgattttgctattccctttcgacctgaagtaaagtctcgattttgacaac 56203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 8940 - 8859
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||| ||||||||||| || | |||||| |||||||||||||||    |||||||||||||||||||||    
T  8940 tttatgactatatacaacttataacatatatttagcattatctttgttttggtaaaatccatcgattttgattgcgatttta 8859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 24530 - 24617
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||| ||||||||||||||| || |||||||||||| ||||||| | ||  |||||||||||||||||||||||||||| ||| ||||    
T  24530 tatatgcaatttataacatatatttaacattattttttttttggt-agaatcttcgattttgattgcgattttatgagtctcgactttg 24617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 24662 - 24733
Alignment:
Q  222 gattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||| | |||||| ||||||||||||||  | ||||||||||| ||||||||||||  ||||||||    
T  24662 gattttgattacaattttacgagtcccgattttgctactccctttcgacttgaagtaaagttttgattttga 24733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 133108 - 133013
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcccgattttg 255  Q
    ||||||||||||| ||||||||||||||| || ||||||| ||||||||| ||| ||   || ||||||||||||||||||| ||||||||| ||||    
T  133108 tttatgactatatgcaatttataacatatatttaacattaattttgttttagtagaatcctt-gattttgattgcgattttacgagtcccgactttg 133013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 14782 - 14708
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    |||||||||||||||||||||| ||||||||||||||  | ||| ||||||| ||||||||||  ||||||||||    
T  14782 ttcgattttgattgcgattttacgagtcccgattttgctactccatttcgacttgaagtaaagccccgattttga 14708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 38375 - 38305
Alignment:
Q  227 tgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||||| |||||| ||||||||||||||  ||| ||||||||| ||||||||||| ||||||||||||||    
T  38375 tgattgcaattttacgagtcccgattttgctatttcctttcgacttgaagtaaagtcccgattttgacaac 38305  T

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Target: scaffold0017; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 38525 - 38475
Alignment:
Q  158 ctttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    |||||||||||||||||||||||||||||| || | |||||||||||||||    
T  38525 ctttatgactatatacaatttataacatatatttatcattatttttgtttt 38475  T

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Target: scaffold1178 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 471 - 551
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| ||||||||| ||||| || | |||||||||||||||||| | ||   |||||||||||||||||||||    
T  471 tttatgactatatgcaatttatatcatatatttagcattatttttgttttggt-agaatcctcgattttgattgcgatttta 551  T

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Target: scaffold0061 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 76306 - 76257
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||    
T  76306 tttatgactatatacaatttataacatatatttatcattatttttgtttt 76257  T

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Target: scaffold0061; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 76155 - 76087
Alignment:
Q  229 attgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttgacaac 297  Q
    ||||| |||||| ||||||||  ||||  ||| |||||||||  |||||||||| ||||||||||||||    
T  76155 attgcaattttacgagtcccgggtttgctatttcctttcgactggaagtaaagtcccgattttgacaac 76087  T

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Target: scaffold2084 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 101 - 175
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    ||||||||| ||| | |||||| ||||||||||||||  | ||||||| ||| ||||||||||| ||||||||||    
T  101 ttcgattttaattacaattttacgagtcccgattttgctactcccttttgacttgaagtaaagtcccgattttga 175  T

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Target: scaffold0526 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 8429 - 8503
Alignment:
Q  219 ttcgattttgattgcgattttatgagtcccgattttgaaattccctttcgacctgaagtaaagttccgattttga 293  Q
    ||||||||||| ||| |||||||||||||| |||||   | ||||||||||| | ||||||| | ||||||||||    
T  8429 ttcgattttgactgcaattttatgagtcccaattttactactccctttcgacttaaagtaaactcccgattttga 8503  T

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