View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_29 (Length: 303)
Name: NF17796_low_29
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 41076009 - 41075739
Alignment:
| Q |
16 |
atggctcctctcactcttcatgagattcaactgtataaacataaaaagttcaagaaaaagataagacagacataaaaggtgttagaacatattacataat |
115 |
Q |
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| T |
41076009 |
atggctcctctcactcttcatgagattcaactgtataaacataaaaagttcaagaaaaagataagacagacataaaaggtgttagaacatattacataat |
41075910 |
T |
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| Q |
116 |
gtgatacaaacgaacgattaaagcatattattatacaatttaagcacatgtcttatattatatgagtcatgaatggcacaccctgcaattcacagcattt |
215 |
Q |
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| T |
41075909 |
gtgatacaaacgaacgattaaagcatattattatacaatttaagcacatgtcttatattatatgagtcatgaatggcacaccctgcaattcacagcattt |
41075810 |
T |
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| Q |
216 |
gctagggcatttgtaagattttctttgttaacaaaaagtacaggaaaataaatttgaacgggtgacacttg |
286 |
Q |
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| T |
41075809 |
gctagggcatttgtaagattttctttgttaacaaaaagtacaggaaaataaatttgaacgggtgacacttg |
41075739 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 50191123 - 50191178
Alignment:
| Q |
211 |
catttgctagggcatttgtaagattttctttgttaacaaaaagtacaggaaaataaa |
267 |
Q |
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| T |
50191123 |
catttgct-gggcatttgtaagattctctttgttaaccaaaagtacagaaaaataaa |
50191178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 4131938 - 4131979
Alignment:
| Q |
27 |
cactcttcatgagattcaactgtataaacataaaaagttcaa |
68 |
Q |
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| T |
4131938 |
cactcttcatgcgattcatctgtataaacataaaaaattcaa |
4131979 |
T |
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