View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17796_low_3 (Length: 613)

Name: NF17796_low_3
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17796_low_3
NF17796_low_3
[»] chr8 (15 HSPs)
chr8 (297-580)||(25692409-25692692)
chr8 (13-241)||(25383315-25383543)
chr8 (359-580)||(25384122-25384343)
chr8 (90-241)||(25645254-25645407)
chr8 (90-218)||(25388078-25388206)
chr8 (494-580)||(25488161-25488247)
chr8 (13-84)||(25645073-25645144)
chr8 (94-239)||(25445659-25445801)
chr8 (386-473)||(25602609-25602696)
chr8 (13-84)||(25691791-25691862)
chr8 (498-580)||(25798558-25798640)
chr8 (510-580)||(25602698-25602768)
chr8 (294-337)||(25389413-25389456)
chr8 (90-153)||(25798496-25798560)
chr8 (294-334)||(25384082-25384122)
[»] scaffold0070 (3 HSPs)
scaffold0070 (296-580)||(19231-19515)
scaffold0070 (331-580)||(38628-38866)
scaffold0070 (90-178)||(20073-20161)
[»] scaffold0955 (3 HSPs)
scaffold0955 (331-580)||(3574-3812)
scaffold0955 (90-222)||(2710-2841)
scaffold0955 (294-340)||(3418-3464)
[»] chr3 (1 HSPs)
chr3 (506-580)||(20591921-20591995)
[»] chr5 (1 HSPs)
chr5 (383-455)||(16499164-16499236)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 297 - 580
Target Start/End: Original strand, 25692409 - 25692692
Alignment:
Q  297 ttatttgattaactattagaaaaataagatttttaaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttgag 396  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  25692409 ttatttgattagctattagaaaaataagatttttaaaaaatgaagtatgtctatatttttccatatttgtacaaacagaacagaagctgaacttgttgag 25692508  T
Q  397 gaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatcatcaaattattaaattagagcaacttgcacaacttcagcttc 496  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  25692509 gaaattgcaatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatcatcaaattactaaactagagcaacttgcacaacttcagcttc 25692608  T
Q  497 aatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatgaaga 580  Q
    |||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  25692609 aatattataaaagcatagatacttacgaaaatcaaataagtcatgaggcaacggttcaatgcataactgaacttaagatgaaga 25692692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 25383315 - 25383543
Alignment:
Q  13 gaagctgcagatactctttcagttattcaaggagaacatcgttgaaaacttgaaataaaactcaaattcatactttaaaactaacccaatattttaaact 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25383315 gaagctgcagatactctttcagttattcaaggagaacatcgttgaaaacttgaaataaaactcaaattcatattttaaaactaacccaatattttaaact 25383414  T
Q  113 ccttttgatcctcaattcactctttctttaatttctacatactttaataggcaaagaagctgcatagatcgagcatcaatctatataaaaagggaagttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  25383415 ccttttgatcctcaattcactctttctttaatttctacatactttaataggcaaagaagctgcatagatcgagcatcgatctatataaaaagggaagttg 25383514  T
Q  213 tcaagtatattagataacaagagaggaaa 241  Q
    ||||||||||||||||| |||||||||||    
T  25383515 tcaagtatattagataataagagaggaaa 25383543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 359 - 580
Target Start/End: Original strand, 25384122 - 25384343
Alignment:
Q  359 atgtttgtagaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatcatca 458  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||| ||||  ||||||| ||    
T  25384122 atgtttgtataaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagctgaaacatgtttatgttcgtgatctggatcacca 25384221  T
Q  459 aattattaaattagagcaacttgcacaacttcagcttcaatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgc 558  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  25384222 aattactaaattagtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgc 25384321  T
Q  559 ataactgaacttaagatgaaga 580  Q
    ||||||||||||||||||||||    
T  25384322 ataactgaacttaagatgaaga 25384343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 25645254 - 25645407
Alignment:
Q  90 aaactaacccaatattttaaactccttttgatcctcaattcactctttctttaatttctacatactttaataggcaaagaagctgcatagatcgagcatc 189  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25645254 aaactaacccaatattttaaactccttt-gatcctcaattcactctatctttaatttctacatactttaataggcaaagaagctgcatagatcgagcatc 25645352  T
Q  190 aatctatataaaaagggaagttctcaagta---tattagataacaagagaggaaa 241  Q
     |||||||||||||||||| ||||||||||   ||||||||||||||||||||||    
T  25645353 gatctatataaaaagggaatttctcaagtatattattagataacaagagaggaaa 25645407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 25388078 - 25388206
Alignment:
Q  90 aaactaacccaatattttaaactccttttgatcctcaattcactcttt-ctttaatttctacatactttaataggcaaagaagctgcatagatcgagcat 188  Q
    ||||||||||||||||||||||||| || ||| |||||||| |||||| |||||||||||||||| ||||||  ||||||||| |||||||||||| | |    
T  25388078 aaactaacccaatattttaaactccgtt-gattctcaattctctctttgctttaatttctacatattttaatgagcaaagaagttgcatagatcgaccgt 25388176  T
Q  189 caatctatataaaaagggaagttctcaagt 218  Q
    | ||||||||||||||||||||||||||||    
T  25388177 cgatctatataaaaagggaagttctcaagt 25388206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 494 - 580
Target Start/End: Original strand, 25488161 - 25488247
Alignment:
Q  494 ttcaatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatgaaga 580  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||||    
T  25488161 ttcaatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcatcgcataacagaacttaagatgaaga 25488247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 25645073 - 25645144
Alignment:
Q  13 gaagctgcagatactctttcagttattcaaggagaacatcgttgaaaacttgaaataaaactcaaattcata 84  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25645073 gaagctgcagacactctttcagttattcaaggagaacatcgttgaaaacttgaaataaaactcaaattcata 25645144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 25445659 - 25445801
Alignment:
Q  94 taacccaatattttaaactccttttgatcctcaattcactctttctttaatttctacatactttaataggcaaagaagctgcatagatcgagcatcaatc 193  Q
    ||||||||||||||||||||| || ||| |||||||| || || |||||||||||||||| ||||||  ||||||||| |||||||||| | |||| |||    
T  25445659 taacccaatattttaaactccgtt-gattctcaattctct-ttgctttaatttctacatattttaatgagcaaagaagttgcatagatcaaccatcgatc 25445756  T
Q  194 tatataaaaagggaagttctcaagtatattagataacaagagagga 239  Q
    ||||||||||||||||||||||||| ||| || | |||||||||||    
T  25445757 tatataaaaagggaagttctcaagtgtataaggt-acaagagagga 25445801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 25602609 - 25602696
Alignment:
Q  386 aacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatcatcaaattattaaattaga 473  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||| ||||||| |||||||||    
T  25602609 aacttgttgaggaaattgcaatggatgtgctgcaaaatttgaatcgtctttatgttggtgacttggatcaacaaattactaaattaga 25602696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 25691791 - 25691862
Alignment:
Q  13 gaagctgcagatactctttcagttattcaaggagaacatcgttgaaaacttgaaataaaactcaaattcata 84  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25691791 gaagctgcagaaactctttcagttattcaaggagaacatcgttgaaaacttgaaatgaaactcaaattcata 25691862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 580
Target Start/End: Original strand, 25798558 - 25798640
Alignment:
Q  498 atattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatgaaga 580  Q
    ||||||| | |||||||||||||||||||||||||||  ||||||||||||||||||| ||||||  ||||||||||||||||    
T  25798558 atattataagagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaatgcataaaagaacttaagatgaaga 25798640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 580
Target Start/End: Original strand, 25602698 - 25602768
Alignment:
Q  510 catagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatgaaga 580  Q
    |||||||||||| |||||| |||| | |||||||||||||||| |||||||||| ||||||||||||||||    
T  25602698 catagatacttatgaaaataaagtttgtcatgaggcaacggttgaacgcataacagaacttaagatgaaga 25602768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 25389413 - 25389456
Alignment:
Q  294 atgttatttgattaactattagaaaaataagatttttaaaaaat 337  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  25389413 atgttatttgatttactattagaaaaataagatttttaaaaaat 25389456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 25798496 - 25798560
Alignment:
Q  90 aaactaacccaatattttaaactccttttgatcctcaattcactcttt--ctttaatttctacata 153  Q
    |||||||||||||||||||||||||  ||||| |||||||| ||||||  ||||||||||||||||    
T  25798496 aaactaacccaatattttaaactcc-attgattctcaattctctcttttgctttaatttctacata 25798560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 25384082 - 25384122
Alignment:
Q  294 atgttatttgattaactattagaaaaataagatttttaaaa 334  Q
    |||||||||||||||||||| ||||  ||||||||||||||    
T  25384082 atgttatttgattaactattggaaatttaagatttttaaaa 25384122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 296 - 580
Target Start/End: Complemental strand, 19515 - 19231
Alignment:
Q  296 gttatttgattaactattagaaaaataagatttttaaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttga 395  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  19515 gttatttgattaactattagaaaaattagatttttaaaaaatgaagtatgtctatatttttccatgtttgtacaaacagaacataagctgaacttgttga 19416  T
Q  396 ggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatcatcaaattattaaattagagcaacttgcacaacttcagctt 495  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||    
T  19415 ggaaattgcgatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatcatcaaattactatactagagcaacttgcacaacttcagctt 19316  T
Q  496 caatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatgaaga 580  Q
    ||||||||| ||||||||||||||||||||||| |||||  ||||||| ||||||||| ||||||||||||||||||||||||||    
T  19315 caatattataaaagcatagatacttacgaaaattaagtaagtcatgagtcaacggttccacgcataactgaacttaagatgaaga 19231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 331 - 580
Target Start/End: Complemental strand, 38866 - 38628
Alignment:
Q  331 aaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgaata 430  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |     
T  38866 aaaaaaagaagtatgtttatatttttccatgtttgtacaaacagaacagaagctgaacttgttgaggaaattgcgatgggtgtgctgcaaaagttgattc 38767  T
Q  431 gtgtttatgttggtgacttggatcatcaaattattaaattagagcaacttgcacaacttcagcttcaatattatcaaagcatagatacttacgaaaatca 530  Q
        |||  || | |           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38766 aatattaaattagag-----------caaattattaaattagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatca 38678  T
Q  531 agtatttcatgaggcaacggttcaacgcataactgaacttaagatgaaga 580  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  38677 agtaagtcatgaggcaacggttcaacgcataactgaacttaagatgaaga 38628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 20161 - 20073
Alignment:
Q  90 aaactaacccaatattttaaactccttttgatcctcaattcactcttt-ctttaatttctacatactttaataggcaaagaagctgcata 178  Q
    ||||||||||||||||||||||||| || ||| |||||||| |||||| |||||||||||||||| ||||||  ||||||||| ||||||    
T  20161 aaactaacccaatattttaaactccatt-gattctcaattctctctttgctttaatttctacatattttaatgagcaaagaagttgcata 20073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955 (Bit Score: 148; Significance: 8e-78; HSPs: 3)
Name: scaffold0955
Description:

Target: scaffold0955; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 331 - 580
Target Start/End: Original strand, 3574 - 3812
Alignment:
Q  331 aaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgaata 430  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  3574 aaaaaaagaagtatgtttatatttttccatgtttgtacaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgattc 3673  T
Q  431 gtgtttatgttggtgacttggatcatcaaattattaaattagagcaacttgcacaacttcagcttcaatattatcaaagcatagatacttacgaaaatca 530  Q
        |||  || | |           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3674 aatattaaattagag-----------caaattattaaattagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatca 3762  T
Q  531 agtatttcatgaggcaacggttcaacgcataactgaacttaagatgaaga 580  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  3763 agtaagtcatgaggcaacggttcaacgcataactgaacttaagatgaaga 3812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 2710 - 2841
Alignment:
Q  90 aaactaacccaatattttaaactccttttgatcctcaattcactcttt-ctttaatttctacatactttaataggcaaagaagctgcatagatcgagcat 188  Q
    ||||||||||||||||||||||||| || ||| |||||||| |||||| |||||||||||||||| ||||||  ||||||||| |||||||||||| |||    
T  2710 aaactaacccaatattttaaactccctt-gattctcaattctctctttgctttaatttctacatattttaatgagcaaagaagttgcatagatcgaccat 2808  T
Q  189 caatctatataaaaagggaagttctcaagtatat 222  Q
    | |||||||| |||||||||||||||||||||||    
T  2809 ctatctatat-aaaagggaagttctcaagtatat 2841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 3418 - 3464
Alignment:
Q  294 atgttatttgattaactattagaaaaataagatttttaaaaaatgaa 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3418 atgttatttgattaactattagaaaaataagatttttaaaaaatgaa 3464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 580
Target Start/End: Original strand, 20591921 - 20591995
Alignment:
Q  506 aaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatgaaga 580  Q
    |||||||||||||||| ||||||||||||  |||||| ||||||||| |||| ||||  ||||||||||||||||    
T  20591921 aaagcatagatacttatgaaaatcaagtaagtcatgacgcaacggttgaacgtataatagaacttaagatgaaga 20591995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 16499236 - 16499164
Alignment:
Q  383 ctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatca 455  Q
    |||||||| ||||| ||||||||| ||||||  || |||| || ||| | ||||||||||||||||| |||||    
T  16499236 ctgaacttcttgagaaaattgcgaaggatgtattggaaaaattaaatcgagtttatgttggtgacttagatca 16499164  T

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