View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17796_low_37 (Length: 246)

Name: NF17796_low_37
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17796_low_37
NF17796_low_37
[»] chr4 (5 HSPs)
chr4 (23-238)||(45419976-45420191)
chr4 (48-167)||(46389387-46389506)
chr4 (48-186)||(48211931-48212069)
chr4 (59-231)||(17779391-17779563)
chr4 (67-183)||(53709698-53709814)
[»] chr3 (5 HSPs)
chr3 (57-177)||(13501760-13501880)
chr3 (167-233)||(49497738-49497804)
chr3 (75-159)||(27503090-27503174)
chr3 (70-111)||(2438088-2438129)
chr3 (75-120)||(6751845-6751890)
[»] chr6 (2 HSPs)
chr6 (68-183)||(32095567-32095682)
chr6 (64-120)||(19111874-19111930)
[»] chr1 (1 HSPs)
chr1 (68-238)||(23265875-23266045)
[»] scaffold0015 (1 HSPs)
scaffold0015 (65-238)||(53639-53812)
[»] chr7 (8 HSPs)
chr7 (57-165)||(21503465-21503573)
chr7 (64-183)||(5633478-5633597)
chr7 (68-165)||(22908510-22908608)
chr7 (75-165)||(7807965-7808056)
chr7 (23-162)||(19064777-19064917)
chr7 (68-163)||(15026032-15026127)
chr7 (64-150)||(29131121-29131207)
chr7 (185-238)||(48768375-48768428)
[»] chr8 (5 HSPs)
chr8 (64-183)||(26382858-26382977)
chr8 (65-186)||(17835664-17835786)
chr8 (50-114)||(13524640-13524704)
chr8 (50-114)||(13614175-13614239)
chr8 (75-120)||(23430929-23430974)
[»] chr2 (3 HSPs)
chr2 (64-183)||(33348405-33348524)
chr2 (149-236)||(11500662-11500749)
chr2 (194-238)||(11551693-11551737)
[»] scaffold0068 (1 HSPs)
scaffold0068 (48-186)||(6855-6993)
[»] chr5 (2 HSPs)
chr5 (48-186)||(21706917-21707055)
chr5 (140-236)||(19233931-19234027)
[»] scaffold0006 (1 HSPs)
scaffold0006 (57-165)||(204683-204791)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 45420191 - 45419976
Alignment:
Q  23 agtttatcccatgacaatcagtgagttccttttttatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaag 122  Q
    ||||||||| ||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45420191 agtttatcctatggcaaccagtgaattccttttttatgtgatcctgaatgaccccaccagaaagagttcatcattttttcaatttcatcacaaagagaag 45420092  T
Q  123 aaggtagcgtgaacaagctcataaaataagttggaatagattgtaagacaaatttaattaatacctcacggcctgccttcggtaaacacttactactcca 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  45420091 aaggtagcgtgaacaagctcataaaataagttggaatagattgtaagacagatttaattaacacctcacgacctgccttcgataaacacttactactcca 45419992  T
Q  223 agaattaattttcttc 238  Q
    ||||||||||||||||    
T  45419991 agaattaattttcttc 45419976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 46389387 - 46389506
Alignment:
Q  48 ttccttttttatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaa 147  Q
    ||||||| || | ||||||| | ||| ||||||| |||||||||||||| || ||||| |||||||| |  || |||||||| || || |||||||||||    
T  46389387 ttcctttcttgtttgatcctaagtgaccccaccaaaaagagttcatcatcttctcaatctcatcacacaacgacgaaggtagagtaaataagctcataaa 46389486  T
Q  148 ataagttggaatagattgta 167  Q
    ||| |||||||| |||||||    
T  46389487 atacgttggaattgattgta 46389506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 48212069 - 48211931
Alignment:
Q  48 ttccttttttatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaa 147  Q
    ||||||| || | ||||||||| ||| ||||||| |||||||||||||| || ||||| |||||||| |  ||  ||||||| || || |||||||||||    
T  48212069 ttcctttcttgtttgatcctgagtgaccccaccaaaaagagttcatcatcttctcaatctcatcacacaacgacaaaggtagagtaaataagctcataaa 48211970  T
Q  148 ataagttggaatagattgtaagacaaatttaattaatac 186  Q
    ||| |||||||| ||||| |  |||||||| || |||||    
T  48211969 atacgttggaattgattgaagaacaaattttatcaatac 48211931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 17779391 - 17779563
Alignment:
Q  59 tgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaa 158  Q
    ||||| ||||| ||| ||||||| ||||| || | ||||||||||||||||||||| | ||| || ||||| || ||||  ||||| || || |||||||    
T  17779391 tgtgaccctgagtgaccccaccaaaaagaatttaacattttttcaatttcatcacacaaagacgatggtagagtaaacagactcatgaagtaggttggaa 17779490  T
Q  159 tagattgtaagacaaatttaattaatacctcacggcctgccttcggtaaacacttactactccaagaattaat 231  Q
    | ||||| |  || ||||||||||| ||||| |||||  |||| |  |  |||||||||||||| ||||||||    
T  17779491 tggattgaagcaccaatttaattaaaacctctcggccaaccttagagaggcacttactactccaggaattaat 17779563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 53709698 - 53709814
Alignment:
Q  67 tgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagattgt 166  Q
    ||||||| |||||||||| || |||||||| || ||||| |||||||||||||| || ||||  ||||| |  |||||||| || || |||||||| ||     
T  53709698 tgaatgaccccaccagaatgaattcatcatcttgtcaatctcatcacaaagagatgacggtaaagtgaatagactcataaagtatgtgggaatagactga 53709797  T
Q  167 aagacaaatttaattaa 183  Q
    | |||| ||||||||||    
T  53709798 aggacagatttaattaa 53709814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 13501880 - 13501760
Alignment:
Q  57 tatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttgg 156  Q
    ||||||||||||| ||| ||||||| ||||| ||||||||||| |||||||||||||| |  || ||||| || || || | |||||||||||| |||||    
T  13501880 tatgtgatcctgagtgaccccaccaaaaagaattcatcattttctcaatttcatcacacaatgacgaagggagagtaaataggctcataaaatatgttgg 13501781  T
Q  157 aatagattgtaagacaaattt 177  Q
     || ||||| | |||||||||    
T  13501780 gattgattgaaggacaaattt 13501760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 49497804 - 49497738
Alignment:
Q  167 aagacaaatttaattaatacctcacggcctgccttcggtaaacacttactactccaagaattaattt 233  Q
    |||||| ||||||| |  |||||||| |||||||| | |||||| ||||||||||||||||||||||    
T  49497804 aagacatatttaatcataacctcacgccctgccttagataaacatttactactccaagaattaattt 49497738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 27503090 - 27503174
Alignment:
Q  75 cccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaat 159  Q
    ||||||| ||||| |||||||| ||||||||||||||||| | ||| || |  || ||||| || ||||||||||| ||||||||    
T  27503090 cccaccaaaaagaattcatcatcttttcaatttcatcacataaagacgacgtgagtgtgaataaactcataaaataggttggaat 27503174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 2438129 - 2438088
Alignment:
Q  70 atgatcccaccagaaagagttcatcattttttcaatttcatc 111  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  2438129 atgaccccaccagaaagtgttcatcattttttctatttcatc 2438088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 6751845 - 6751890
Alignment:
Q  75 cccaccagaaagagttcatcattttttcaatttcatcacaaagaga 120  Q
    ||||||| ||||| |||||||||||||| |||||||||| ||||||    
T  6751845 cccaccaaaaagaattcatcattttttcgatttcatcaccaagaga 6751890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 32095682 - 32095567
Alignment:
Q  68 gaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagattgta 167  Q
    |||||| ||||||| || ||||| ||||||||||||||||||||||| ||||| || || || ||||| || ||||| ||||| ||||| ||||| || |    
T  32095682 gaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagacgagggaagagtgaataaactcatgaaataggttggtatagactgaa 32095583  T
Q  168 agacaaatttaattaa 183  Q
     |||||| ||||||||    
T  32095582 ggacaaacttaattaa 32095567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 19111874 - 19111930
Alignment:
Q  64 tcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagaga 120  Q
    |||||||||| |||| ||||| || |||||||| |||||||| ||||||||||||||    
T  19111874 tcctgaatgaccccagcagaatgaattcatcatcttttcaatctcatcacaaagaga 19111930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 23265875 - 23266045
Alignment:
Q  68 gaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagattgta 167  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||||||| | ||| || |  || ||||| || |||| |||| |||||||||||||||| |    
T  23265875 gaatgaccccaccaaaaagaattcatcatcttttcaatttcatcacacaaagatgacgaaagagtgaataaactcaaaaaagaagttggaatagattgca 23265974  T
Q  168 agacaaatttaattaatacctcacggcctgccttcggtaaacacttactactccaagaattaattttcttc 238  Q
      ||| ||||||| || || || |  |||||||| |  | ||| |||| |||||||||||| |||||||||    
T  23265975 gtacagatttaatcaaaacttctctccctgccttagaaatacatttacaactccaagaatttattttcttc 23266045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 53639 - 53812
Alignment:
Q  65 cctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagatt 164  Q
    ||||| ||| ||||||||||||| |||| ||||||||||||||||||||| || |  || ||||  |||||||| ||||| ||||| ||||| |||||||    
T  53639 cctgagtgaccccaccagaaagaattcaacattttttcaatttcatcacatagggtggagggtaaagtgaacaaactcatgaaataggttgggatagatt 53738  T
Q  165 gtaagacaaatttaattaatacctcacggcctgccttcggtaaacacttactactccaagaattaattttcttc 238  Q
    | |  || |||||||| || || || || ||| |||| |  | ||| || ||||| ||||| ||||||||||||    
T  53739 gcagaactaatttaataaacacatcgcgccctacctttgagagacatttgctacttcaagagttaattttcttc 53812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 21503573 - 21503465
Alignment:
Q  57 tatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttgg 156  Q
    ||||||||||||| ||| ||||||| ||||| ||||||||||| |||||||||||||| |  || ||||| || || || | |||||||||||| |||||    
T  21503573 tatgtgatcctgagtgaccccaccaaaaagaattcatcattttctcaatttcatcacacaacgaggaaggaagagtaaataggctcataaaatatgttgg 21503474  T
Q  157 aatagattg 165  Q
     || |||||    
T  21503473 gattgattg 21503465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 5633597 - 5633478
Alignment:
Q  64 tcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagat 163  Q
    |||| ||||| |||||||||| || |||||||| |||||||| ||||| |||||||| || ||||  ||||| |  |||||||| || || ||||||||     
T  5633597 tccttaatgaccccaccagaatgaattcatcatcttttcaatctcatcgcaaagagatgacggtaaagtgaatagactcataaagtatgtgggaatagac 5633498  T
Q  164 tgtaagacaaatttaattaa 183  Q
    || | |||||||||||||||    
T  5633497 tgaaggacaaatttaattaa 5633478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 22908608 - 22908510
Alignment:
Q  68 gaatgatcccaccagaaag-agttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagattg 165  Q
    |||||| ||||||| |||| | ||||||||| ||||||||||||||||||||||   ||| || |||||||| ||||||||||| || || ||||||||    
T  22908608 gaatgaccccaccaaaaaggaattcatcattctttcaatttcatcacaaagagagacagggagagtgaacaaactcataaaataggtagggatagattg 22908510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 7808056 - 7807965
Alignment:
Q  75 cccaccagaaagagttcatcat-tttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagattg 165  Q
    |||||||||| ||||||||||| |||||||||||||||||| | |||  | || |  ||||| || |||||||||||||| |||||||||||    
T  7808056 cccaccagaaggagttcatcatctttttcaatttcatcacataaagactagggaatagtgaataaactcataaaataagtaggaatagattg 7807965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 19064777 - 19064917
Alignment:
Q  23 agtttatcccatgacaatcagtgagttccttttttatgtgatcctgaatgatcccaccagaaagagttcatca--ttttttcaatttcatcacaaagaga 120  Q
    ||||||||||| |||||||| | | ||| ||| || ||||| | ||| ||| ||||||| || ||||||||||  ||||||||||||||||||| | ||     
T  19064777 agtttatcccaagacaatcaattaattcttttattttgtgaacttgagtgaccccaccaaaatgagttcatcattttttttcaatttcatcacaca-agg 19064875  T
Q  121 agaaggtagcgtgaacaagctcataaaataagttggaataga 162  Q
    |  ||| || || |||| |||||||||||||||||| |||||    
T  19064876 atgaggaagagtaaacatgctcataaaataagttggtataga 19064917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 15026127 - 15026032
Alignment:
Q  68 gaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagaga-agaaggtagcgtgaacaagctcataaaataagttggaatagat 163  Q
    |||||| ||||||| || || ||||||||| |||||||| ||||||||||||| | |||| || |||||||| ||||||||||| || || ||||||    
T  15026127 gaatgaccccaccaaaaggaattcatcattctttcaattccatcacaaagagagacaagg-agagtgaacaaactcataaaataggtagggatagat 15026032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 29131121 - 29131207
Alignment:
Q  64 tcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaata 150  Q
    |||||||| | ||||||| ||||| ||||||||| ||||||||||| || |||||||    || || |||||||| |||||||||||    
T  29131121 tcctgaattaccccaccaaaaagaattcatcattctttcaatttcaccagaaagagagactgggagagtgaacaaactcataaaata 29131207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 48768428 - 48768375
Alignment:
Q  185 acctcacggcctgccttcggtaaacacttactactccaagaattaattttcttc 238  Q
    ||||| || |||||||| | |||||| ||||||||||||||||| |||||||||    
T  48768428 acctcgcgccctgccttagataaacaattactactccaagaatttattttcttc 48768375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 26382858 - 26382977
Alignment:
Q  64 tcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagat 163  Q
    |||||| ||| |||||||||| || |||||||| |||||||| |||||||||||||| || ||||  ||||| |  |||||||| || || ||||||||     
T  26382858 tcctgattgaccccaccagaatgaattcatcatcttttcaatctcatcacaaagagatgacggtaaagtgaatagactcataaagtatgtgggaatagac 26382957  T
Q  164 tgtaagacaaatttaattaa 183  Q
    || | |||| ||||||||||    
T  26382958 tgaatgacagatttaattaa 26382977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 17835786 - 17835664
Alignment:
Q  65 cctgaatgatcccaccagaaagagttcatcatttttt-caatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagat 163  Q
    |||||| || ||||| |||| |||||||| ||||||| |||||| ||||||||| ||| | || || ||||| | |||||| |||||||||||||| |||    
T  17835786 cctgaaagaccccacgagaatgagttcataatttttttcaattttatcacaaagtgaaaatgggagagtgaatatgctcatgaaataagttggaatggat 17835687  T
Q  164 tgtaagacaaatttaattaatac 186  Q
    || | ||  ||||||||||||||    
T  17835686 tgaaggatcaatttaattaatac 17835664  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 13524640 - 13524704
Alignment:
Q  50 ccttttttatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcaca 114  Q
    |||||| ||||||||||||| ||| ||||| | ||||| ||||||||||| ||||||||||||||    
T  13524640 ccttttctatgtgatcctgagtgaccccacaaaaaagaattcatcattttctcaatttcatcaca 13524704  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 13614175 - 13614239
Alignment:
Q  50 ccttttttatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcaca 114  Q
    |||||| ||||||||||||| ||| ||||| | ||||| ||||||||||| ||||||||||||||    
T  13614175 ccttttctatgtgatcctgagtgaccccacaaaaaagaattcatcattttctcaatttcatcaca 13614239  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 23430929 - 23430974
Alignment:
Q  75 cccaccagaaagagttcatcattttttcaatttcatcacaaagaga 120  Q
    ||||||||||| | ||||||||||| ||||| ||||||||||||||    
T  23430929 cccaccagaaatatttcatcattttctcaatatcatcacaaagaga 23430974  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 33348524 - 33348405
Alignment:
Q  64 tcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttggaatagat 163  Q
    |||||| ||| |||||||||| || |||||||| |||||||| |||||||||||||| || ||||  ||||| |  |||||||| || || ||||||||     
T  33348524 tcctgattgaccccaccagaatgaattcatcatcttttcaatctcatcacaaagagatgacggtaaagtgaatagactcataaagtatgtgggaatagac 33348425  T
Q  164 tgtaagacaaatttaattaa 183  Q
    || | |||| ||||||||||    
T  33348424 tgaaggacatatttaattaa 33348405  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 11500749 - 11500662
Alignment:
Q  149 taagttggaatagattgtaagacaaatttaattaatacctcacggcctgccttcggtaaacacttactactccaagaattaattttct 236  Q
    ||||| |||||||| || || ||| ||||||| |  |||||||| ||||| ||||  | |||||||| ||||||||||||||||||||    
T  11500749 taagtgggaatagactgcaaaacagatttaatcatgacctcacgtcctgctttcgaaagacacttaccactccaagaattaattttct 11500662  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 11551737 - 11551693
Alignment:
Q  194 cctgccttcggtaaacacttactactccaagaattaattttcttc 238  Q
    |||||||| | |||||| ||||||||||||||||| |||||||||    
T  11551737 cctgccttagataaacatttactactccaagaatttattttcttc 11551693  T

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Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 6855 - 6993
Alignment:
Q  48 ttccttttttatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaa 147  Q
    ||||||| || | ||||||||| |||  ||| || |||||||||||||| || ||||| |||||||| |   | |||||||| || || |||||||||||    
T  6855 ttcctttcttgtttgatcctgagtgacgccaacaaaaagagttcatcatcttctcaatctcatcacacaacaacgaaggtagagtaaataagctcataaa 6954  T
Q  148 ataagttggaatagattgtaagacaaatttaattaatac 186  Q
    ||| |||||||| ||||| |  ||||||||||| |||||    
T  6955 atacgttggaattgattgaagaacaaatttaatcaatac 6993  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 21707055 - 21706917
Alignment:
Q  48 ttccttttttatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaa 147  Q
    ||||||| || | ||||||||| |||  ||| || |||||||||||||| || ||||| |||||||| |   | |||||||| || || |||||||||||    
T  21707055 ttcctttcttgtttgatcctgagtgacgccaacaaaaagagttcatcatcttctcaatctcatcacacaacaacgaaggtagagtaaataagctcataaa 21706956  T
Q  148 ataagttggaatagattgtaagacaaatttaattaatac 186  Q
    ||| |||||||| ||||| |  ||||||||||| |||||    
T  21706955 atacgttggaattgattgaagaacaaatttaatcaatac 21706917  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 19234027 - 19233931
Alignment:
Q  140 ctcataaaataagttggaatagattgtaagacaaatttaattaatacctcacggcctgccttcggtaaacacttactactccaagaattaattttct 236  Q
    ||||||| ||| | ||||||||| |||| |||  ||||||| |  |||||||| ||||| || | ||||||||||||||||||| |||| |||||||    
T  19234027 ctcataacatacgatggaatagactgtaggacggatttaatcataacctcacgccctgctttagataaacacttactactccaataatttattttct 19233931  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 204683 - 204791
Alignment:
Q  57 tatgtgatcctgaatgatcccaccagaaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttgg 156  Q
    ||||||||||| | ||| ||||||| ||||| ||||||||||| |||||||||||||| |  || ||||| || || || | |||||||||||| |||||    
T  204683 tatgtgatcctaagtgaccccaccaaaaagaattcatcattttctcaatttcatcacacaacgacgaaggcagagtaaataggctcataaaatatgttgg 204782  T
Q  157 aatagattg 165  Q
     || |||||    
T  204783 gattgattg 204791  T

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