View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17796_low_39 (Length: 239)

Name: NF17796_low_39
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17796_low_39
NF17796_low_39
[»] chr5 (4 HSPs)
chr5 (11-239)||(41777412-41777640)
chr5 (123-215)||(29812884-29812976)
chr5 (159-215)||(20252316-20252372)
chr5 (161-215)||(43464748-43464802)
[»] chr4 (8 HSPs)
chr4 (9-239)||(39984038-39984258)
chr4 (112-208)||(41147338-41147434)
chr4 (170-208)||(35460687-35460725)
chr4 (129-209)||(42397482-42397562)
chr4 (129-195)||(12832929-12832995)
chr4 (129-215)||(22323189-22323274)
chr4 (161-217)||(12726550-12726606)
chr4 (132-208)||(55431709-55431785)
[»] chr6 (3 HSPs)
chr6 (9-239)||(8234429-8234653)
chr6 (93-184)||(18971323-18971414)
chr6 (96-215)||(24395180-24395299)
[»] chr1 (4 HSPs)
chr1 (17-239)||(19579458-19579680)
chr1 (169-215)||(32730085-32730131)
chr1 (161-217)||(32303423-32303479)
chr1 (162-202)||(48855159-48855199)
[»] chr8 (6 HSPs)
chr8 (13-239)||(15863824-15864050)
chr8 (66-196)||(38921610-38921740)
chr8 (170-208)||(16975033-16975071)
chr8 (177-215)||(42452480-42452518)
chr8 (161-190)||(20129282-20129311)
chr8 (176-208)||(41691607-41691639)
[»] chr2 (3 HSPs)
chr2 (49-185)||(29648338-29648472)
chr2 (87-214)||(40368911-40369038)
chr2 (129-190)||(37325954-37326015)
[»] scaffold0074 (1 HSPs)
scaffold0074 (94-184)||(25298-25388)
[»] chr3 (7 HSPs)
chr3 (130-195)||(21736881-21736946)
chr3 (129-190)||(669725-669786)
chr3 (162-215)||(33335580-33335633)
chr3 (171-215)||(28946787-28946831)
chr3 (129-215)||(19668257-19668343)
chr3 (129-215)||(53505068-53505154)
chr3 (116-195)||(18378267-18378346)
[»] chr7 (7 HSPs)
chr7 (129-215)||(22359463-22359549)
chr7 (161-200)||(18132790-18132829)
chr7 (161-200)||(18144577-18144616)
chr7 (129-190)||(644258-644319)
chr7 (161-190)||(13063679-13063708)
chr7 (161-190)||(44362760-44362789)
chr7 (159-199)||(38650523-38650563)
[»] scaffold0036 (1 HSPs)
scaffold0036 (116-187)||(3446-3517)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 41777640 - 41777412
Alignment:
Q  11 atcatcaacctgagacctgtcagccatgacgcctgtgtctgtaataaagtggtatgctgctttcactgagtatccttgaaccgggtctaccatccacctc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41777640 atcaacaacctgagacctgtcagccatgacgcctgtgtctgtaataaagcggtatgctgctttcactgagtatccttgaaccgggtctagcatccacctc 41777541  T
Q  111 aaagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctccaaa 210  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  41777540 caagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccctcacacactcctcctcccacgcaaacagacgacgtctccaaa 41777441  T
Q  211 cccactcacttccattaccgccccacccc 239  Q
    ||||||| ||||||||||| |||||||||    
T  41777440 cccactcccttccattaccaccccacccc 41777412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 29812976 - 29812884
Alignment:
Q  123 acagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    ||||| ||||||||||||||||||  |||||||  |  ||||||| ||||||||||||||||||| || |||||||| |||||||| ||||||    
T  29812976 acagtatcctgcaaaacaatgttatttaaaagaatataacactccctcacactctcctcctcccatgctaacagacggcgtctccatacccac 29812884  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 20252316 - 20252372
Alignment:
Q  159 acacactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    ||||||||| ||||||||||||||||||| || |||| |||||| ||||||||||||    
T  20252316 acacactccctcacactctcctcctcccatgctaacaaacgacgcctccaaacccac 20252372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 43464802 - 43464748
Alignment:
Q  161 acactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    ||||||| |||||||||||||||||||||| |||| |||||| | ||| ||||||    
T  43464802 acactccctcacactctcctcctcccacgccaacaaacgacgacgccacacccac 43464748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 39984258 - 39984038
Alignment:
Q  9 acatcatcaacctgagacctgtcagccatgacgcctgtgtctgtaataaagtggtatgctgctttcactgagtatccttgaaccgggtctaccatccacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39984258 acatcatcaacctgagacctgtcagccatgacgcctgtgtctgtaataaagtggtatgctgctttcactgagtatccttgaaccgggtctaacatccacc 39984159  T
Q  109 tcaaagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctcca 208  Q
    || ||||||||||||||||||| |||||||||||||||||||||||||||||||          ||||||||||||||| ||||||||||||||||||||    
T  39984158 tccaagaatcatgaacagtgtcttgcaaaacaatgttacataaaagagcaacac----------actctcctcctcccatgcaaacagacgacgtctcca 39984069  T
Q  209 aacccactcacttccattaccgccccacccc 239  Q
    ||||||||| |||||||||||||||||||||    
T  39984068 aacccactcccttccattaccgccccacccc 39984038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 41147434 - 41147338
Alignment:
Q  112 aagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctcca 208  Q
    |||| |||||||| |  ||||||||||||||||||  |||||||| |  | ||||| |||||||||||||||| |||||||||||||| ||||||||    
T  41147434 aagagtcatgaactgaatcctgcaaaacaatgttatttaaaagagaagaagactccctcacactctcctcctctcacgcaaacagacggcgtctcca 41147338  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 35460725 - 35460687
Alignment:
Q  170 cacactctcctcctcccacgcaaacagacgacgtctcca 208  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  35460725 cacactctcctcctcccacgccaacagacgacgtctcca 35460687  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 42397482 - 42397562
Alignment:
Q  129 tcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctccaa 209  Q
    ||||||||||||||||||  ||| |||   ||||||||| ||||||  ||||||||||| ||||| | |||||||||||||    
T  42397482 tcctgcaaaacaatgttatttaacagattgacacactccctcacaccttcctcctcccaagcaaataaacgacgtctccaa 42397562  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 12832995 - 12832929
Alignment:
Q  129 tcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaaca 195  Q
    ||||||||||||||||||  ||| | ||   |||||||| |||||||||||||||||||||| ||||    
T  12832995 tcctgcaaaacaatgttatctaataaagttgcacactccctcacactctcctcctcccacgccaaca 12832929  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 22323189 - 22323274
Alignment:
Q  129 tcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    ||||||||||||| ||||  |||| ||| | |||||||| ||||||| || ||||||||||| | || |||||| ||||||||||||    
T  22323189 tcctgcaaaacaacgttatttaaa-gagtagcacactccctcacactatcttcctcccacgccatcaaacgacgcctccaaacccac 22323274  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 12726550 - 12726606
Alignment:
Q  161 acactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccactc 217  Q
    ||||||| |||||||||||||||||||||| |||| ||| || | ||| ||||||||    
T  12726550 acactccctcacactctcctcctcccacgccaacaaacgtcgacgccacacccactc 12726606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 55431785 - 55431709
Alignment:
Q  132 tgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctcca 208  Q
    ||||||| |||||||  ||||||| ||  ||||||| |||||| ||| |||||||| |||||||||||  |||||||    
T  55431785 tgcaaaagaatgttatgtaaaagaacagaacactccctcacacactcatcctcccatgcaaacagacggtgtctcca 55431709  T

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Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 8234429 - 8234653
Alignment:
Q  9 acatcatcaacctgagacctgtcagccatgacgcctgtgtctgtaataaagtggtatgctgctttcactgagtatccttgaaccgggtctaccatccacc 108  Q
    |||||||||||||||||||| ||||| ||| | | |||||      ||||  ||||||||||||||||  | || |||||||||||||||| | ||||||    
T  8234429 acatcatcaacctgagacctttcagctatggcacttgtgt------taaaacggtatgctgctttcacataatacccttgaaccgggtctaacgtccacc 8234522  T
Q  109 tcaaagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctcca 208  Q
    || |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||    
T  8234523 tccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacactctcctcctcccaagcatacaaacgacgtctcca 8234622  T
Q  209 aacccactcacttccattaccgccccacccc 239  Q
     |||||| | ||||| |||||| ||||||||    
T  8234623 tacccacacccttccgttaccgtcccacccc 8234653  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 18971323 - 18971414
Alignment:
Q  93 gggtctaccatccacctcaaagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctc 184  Q
    ||||||| |||||||||| |||| ||||| ||| | |||||||||| ||||||||||||||| |||   || ||| ||||||||||||||||    
T  18971323 gggtctaacatccacctccaagagtcatggacattatcctgcaaaataatgttacataaaagggcagagcagtccctcacactctcctcctc 18971414  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 24395299 - 24395180
Alignment:
Q  96 tctaccatccacctcaaagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaaca 195  Q
    |||| |||||||||| | || ||||| ||| | |||||||||||||||||||||||||| |||   || ||| |||||||||||||||| || | |||||    
T  24395299 tctaacatccacctccaggagtcatggacattatcctgcaaaacaatgttacataaaagggcagagcagtccctcacactctcctcctctcatgtaaaca 24395200  T
Q  196 gacgacgtctccaaacccac 215  Q
    | || || ||||| ||||||    
T  24395199 gtcggcgcctccacacccac 24395180  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 19579458 - 19579680
Alignment:
Q  17 aacctgagacctgtcagccatgacgcctgtgtctgtaataaagtggtatgctgctttcactgagtatccttgaaccgggtctaccatccacctcaaagaa 116  Q
    |||||||||||||||||||||||| | ||||||||||||| ||  ||| |||| |||||| || || || ||||||||||||| |  ||| ||| || |     
T  19579458 aacctgagacctgtcagccatgacacttgtgtctgtaatatagcagtaagctgttttcaccgaatacccatgaaccgggtctaacgaccagctccaatag 19579557  T
Q  117 tcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccact 216  Q
    |||| |||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||| | |||||| |||     
T  19579558 tcattaacactgtcctgcgaaataatgttacataaaagagcaacacactccctcacactctcctcctcccatgcatacaaacgacgacgccaaacgcacg 19579657  T
Q  217 cacttccattaccgccccacccc 239  Q
    || | ||||||||| ||||||||    
T  19579658 cattaccattaccgtcccacccc 19579680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 32730131 - 32730085
Alignment:
Q  169 tcacactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    |||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  32730131 tcacactctcctcctcccacgctaacagacgatgcctccacacccac 32730085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 32303423 - 32303479
Alignment:
Q  161 acactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccactc 217  Q
    ||||||| |||||||||||||||||||||| |||| ||| || | ||| ||||||||    
T  32303423 acactccctcacactctcctcctcccacgccaacaaacgtcgacgccacacccactc 32303479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 48855159 - 48855199
Alignment:
Q  162 cactccatcacactctcctcctcccacgcaaacagacgacg 202  Q
    |||||| |||||||||||||||||||||| |||| ||||||    
T  48855159 cactccctcacactctcctcctcccacgccaacaaacgacg 48855199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 15864050 - 15863824
Alignment:
Q  13 catcaacctgagacctgtcagccatgacgcctgtgtctgtaataaagtggtatgctgctttcactgagtatccttgaaccgggtctaccatccacctcaa 112  Q
    ||||||||| ||||||||| ||  |  ||||||| |||||||||||  | |||| ||||||||| || || ||||||||||| ||||  | |||||||      
T  15864050 catcaacctaagacctgtccgcagtagcgcctgtttctgtaataaaacgatatgatgctttcaccgaatacccttgaaccggatctagtaaccacctcct 15863951  T
Q  113 agaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacc 212  Q
    ||| || |||||||||||||||||||||||||| ||||||||||   |||||||| ||||||||||||||| | |  |||||| |||||||||||| |||    
T  15863950 agagtcttgaacagtgtcctgcaaaacaatgttgcataaaagagttgcacactccctcacactctcctccttcgaaacaaacaaacgacgtctccacacc 15863851  T
Q  213 cactcacttccattaccgccccacccc 239  Q
    ||| | || |||||| || ||||||||    
T  15863850 cacgccctgccattaacgtcccacccc 15863824  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 38921610 - 38921740
Alignment:
Q  66 gctgctttcactgagtatccttgaaccgggtctaccatccacctcaaagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacact 165  Q
    |||| ||||||||| || || | ||| ||||||| || ||||||| | || ||||| ||| | ||||||||||||||||||||||||| ||||   ||||    
T  38921610 gctgttttcactgaatacccattaacggggtctaacagccacctccaggagtcatggacattttcctgcaaaacaatgttacataaaaaagcagagcact 38921709  T
Q  166 ccatcacactctcctcctcccacgcaaacag 196  Q
    || ||||||||||||||||||| ||||||||    
T  38921710 ccctcacactctcctcctcccatgcaaacag 38921740  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 16975033 - 16975071
Alignment:
Q  170 cacactctcctcctcccacgcaaacagacgacgtctcca 208  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  16975033 cacacactcctcctcccaagcaaacagacgacgtctcca 16975071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 42452518 - 42452480
Alignment:
Q  177 tcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  42452518 tcctcctcccacgcaaatagacgacgtctccacacccac 42452480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 20129311 - 20129282
Alignment:
Q  161 acactccatcacactctcctcctcccacgc 190  Q
    ||||||||||||||||||||||||||||||    
T  20129311 acactccatcacactctcctcctcccacgc 20129282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 41691639 - 41691607
Alignment:
Q  176 ctcctcctcccacgcaaacagacgacgtctcca 208  Q
    |||||||||||| ||||||||||||||||||||    
T  41691639 ctcctcctcccaagcaaacagacgacgtctcca 41691607  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 29648472 - 29648338
Alignment:
Q  49 ctgtaataaagtggtatgctgctttcactgagtatccttgaaccgggtctaccatccacctcaaagaatcatgaacagtgtcctgcaaaacaatgttaca 148  Q
    ||||||||||  |||||||||||||||| || || ||| |||| || |||| | |||||||| |||| ||||||||| ||||||||| | ||| ||||||    
T  29648472 ctgtaataaaacggtatgctgctttcaccgaataccctcgaac-ggatctaacgtccacctccaagagtcatgaacattgtcctgcacatcaaagttaca 29648374  T
Q  149 taaaagagcaacacactccatcacactctcctcctcc 185  Q
    ||||| || |||||||||| |||||||||||||||||    
T  29648373 taaaa-agaaacacactccctcacactctcctcctcc 29648338  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 40368911 - 40369038
Alignment:
Q  87 tgaaccgggtctaccatccacctcaaagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctccc 186  Q
    ||||| ||||||| || ||||  | ||| |||||||||||  ||||||||||||||||||  ||| ||   |  ||||||| |||||   ||||||||||    
T  40368911 tgaacggggtctaacaaccactgccaagtatcatgaacagaatcctgcaaaacaatgttatgtaatagcaaaggacactccctcacagattcctcctccc 40369010  T
Q  187 acgcaaacagacgacgtctccaaaccca 214  Q
    |||||||||||||||||||||| |||||    
T  40369011 acgcaaacagacgacgtctccataccca 40369038  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 37325954 - 37326015
Alignment:
Q  129 tcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgc 190  Q
    ||||||||| ||||||||  | | | |||| |||||||| ||||||||||||||||||||||    
T  37325954 tcctgcaaatcaatgttatcttataaagcagcacactccctcacactctcctcctcccacgc 37326015  T

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Target: scaffold0074 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 25388 - 25298
Alignment:
Q  94 ggtctaccatccacctcaaagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctc 184  Q
    |||||| |||||||||| |||| ||||| ||| | |||||||||| ||||||||||||||| |||   || ||| ||||||||||||||||    
T  25388 ggtctaacatccacctccaagagtcatggacattatcctgcaaaataatgttacataaaagggcagagcagtccctcacactctcctcctc 25298  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 21736946 - 21736881
Alignment:
Q  130 cctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaaca 195  Q
    |||||||||||||||||||||| || | |  ||||||| ||||||||||||||||||| |||||||    
T  21736946 cctgcaaaacaatgttacataacagggtagaacactccctcacactctcctcctcccaagcaaaca 21736881  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 669725 - 669786
Alignment:
Q  129 tcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgc 190  Q
    ||||||||||||||||||||||| | | || |||||||| ||||| |||||||||| |||||    
T  669725 tcctgcaaaacaatgttacataacaaaacagcacactccctcacattctcctcctctcacgc 669786  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 33335580 - 33335633
Alignment:
Q  162 cactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    |||||| |||| | ||||||||| ||||||||||||||||||||||| ||||||    
T  33335580 cactccctcacgcgctcctcctctcacgcaaacagacgacgtctccacacccac 33335633  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 28946787 - 28946831
Alignment:
Q  171 acactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||    
T  28946787 acactcttctcctcccacgctaacagacgacgtctccatacccac 28946831  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 19668257 - 19668343
Alignment:
Q  129 tcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    |||||||||||||  |||  ||| |||| | |||||||  |||| ||||||||||||||||| || |||||||| ||||| ||||||    
T  19668257 tcctgcaaaacaacattatttaacagagaagcacactctctcacgctctcctcctcccacgccaagagacgacgcctccacacccac 19668343  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 53505154 - 53505068
Alignment:
Q  129 tcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    ||||||||||||||||||  ||| | ||||  ||||||| |||||||||| |||||||| || ||||  || |||||||| ||||||    
T  53505154 tcctgcaaaacaatgttaagtaacaaagcacaacactccctcacactctcttcctcccatgctaacaatcgtcgtctccacacccac 53505068  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 18378267 - 18378346
Alignment:
Q  116 atcatgaacagtgtcctgcaaaacaatgttacataa-aagagcaacacactccatcacactctcctcctcccacgcaaaca 195  Q
    |||||| ||| | ||||||||| ||||||||  ||| |||| ||||||||||| |||||| |||||||||||| |||||||    
T  18378267 atcatgtacattttcctgcaaagcaatgttatgtaacaaga-caacacactccctcacaccctcctcctcccaagcaaaca 18378346  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 22359463 - 22359549
Alignment:
Q  129 tcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgcaaacagacgacgtctccaaacccac 215  Q
    ||||||||||||||||||  ||| || | |||||||||| |||||||||| |||||||| || | ||  ||||| ||||||||||||    
T  22359463 tcctgcaaaacaatgttatttaacagtgaaacacactccctcacactctcttcctcccaagccagcaatcgacgcctccaaacccac 22359549  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 18132790 - 18132829
Alignment:
Q  161 acactccatcacactctcctcctcccacgcaaacagacga 200  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  18132790 acactccctcacactctcctcctcccacgccaacagacga 18132829  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 18144577 - 18144616
Alignment:
Q  161 acactccatcacactctcctcctcccacgcaaacagacga 200  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  18144577 acactccctcacactctcctcctcccacgccaacagacga 18144616  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 644319 - 644258
Alignment:
Q  129 tcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctcccacgc 190  Q
    ||||||||||||| ||||  ||| |||| |||||||||| ||||||| |||||||| |||||    
T  644319 tcctgcaaaacaacgttatttaacagagaaacacactccctcacactatcctcctctcacgc 644258  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 13063708 - 13063679
Alignment:
Q  161 acactccatcacactctcctcctcccacgc 190  Q
    ||||||||||||||||||||||||||||||    
T  13063708 acactccatcacactctcctcctcccacgc 13063679  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 190
Target Start/End: Original strand, 44362760 - 44362789
Alignment:
Q  161 acactccatcacactctcctcctcccacgc 190  Q
    ||||||||||||||||||||||||||||||    
T  44362760 acactccatcacactctcctcctcccacgc 44362789  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 38650563 - 38650523
Alignment:
Q  159 acacactccatcacactctcctcctcccacgcaaacagacg 199  Q
    ||||||||| ||||||||||||||||||| || ||||||||    
T  38650563 acacactccctcacactctcctcctcccaagccaacagacg 38650523  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 3517 - 3446
Alignment:
Q  116 atcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccatcacactctcctcctccca 187  Q
    ||||| |||| | |||||||||||||||||| |||| | ||||  ||||||| ||||||| |||||||||||    
T  3517 atcattaacattttcctgcaaaacaatgttagataataaagcagaacactccctcacactatcctcctccca 3446  T

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