View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_4 (Length: 610)
Name: NF17796_low_4
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 16 - 592
Target Start/End: Complemental strand, 2177114 - 2176534
Alignment:
| Q |
16 |
aatatcatatgaaaaattagaagcaaaattcaaagacacaaaggcaataacctacaaagatgaggtaggcaataaaaagatcatctctcccctaacaaga |
115 |
Q |
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| T |
2177114 |
aatatcatatgaaaaattagcagcaaaattcaaagacacaaaggcaataacctacaaagatgaggtaggcaataaaaagatcatatctcccctaacaaga |
2177015 |
T |
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| Q |
116 |
aagggagttaggaaaagtgttcgttttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatg |
215 |
Q |
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| T |
2177014 |
aaggcagttaggaaaagtgttcggtttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatg |
2176915 |
T |
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| Q |
216 |
aattattaggagaaagagaaaggatgaatgttactagagtgaaggtgaagatgacaaaggaagaagcagctaagttactgtcaaaatttaaatgcaaaga |
315 |
Q |
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| T |
2176914 |
aattattaggagaaagagaaaggatgaatgttactagagtgaaggtaaagatgacaaaggaagaagcagctaagttactgtcaaaatttaaatgcaaaga |
2176815 |
T |
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| Q |
316 |
a---ggagttcttccattcaaggatgttgcttctgagcttatagcactcccaatggaccgagttaccattctgtcaacttgaaccaacatatagcctctc |
412 |
Q |
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| T |
2176814 |
aggaggagttcttccattcaaggatgttgcttctgaacttatagcactcccaatggaccgagttaccattctgtcaacttgaaccaacatataacctctc |
2176715 |
T |
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| Q |
413 |
tagaatgaaatataagaaaaaatattcaaaaagtcaaatgtatttggttcgagacaccgtagaacacggtatgcagtgttagtgtgtttctgtgtgagtc |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
2176714 |
tagaatgaaatataagaaaaaatattcaaaaagtcaaatgtatttggttcgagacaccgtagaacacggtatccagtgttagtgtgtttccttgtgagtc |
2176615 |
T |
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| Q |
513 |
-ttgggagttccaaaagtacttggactacactattgtatatattgtctacacattttgcaagaacagagaaatgctaattt |
592 |
Q |
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| T |
2176614 |
tttgggagtcccaaaagtacttggactacactattgtatatattgtctacacattttgcaagaacagagaaatgctaattt |
2176534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 458
Target Start/End: Original strand, 31846124 - 31846152
Alignment:
| Q |
430 |
aaaaatattcaaaaagtcaaatgtatttg |
458 |
Q |
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| T |
31846124 |
aaaaatattcaaaaagtcaaatgtatttg |
31846152 |
T |
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