View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_41 (Length: 234)
Name: NF17796_low_41
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 37492711 - 37492913
Alignment:
| Q |
16 |
atgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgatttac |
115 |
Q |
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| T |
37492711 |
atgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgatttac |
37492810 |
T |
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| Q |
116 |
gtataagaataaggcttttattaaaaaagataaggagattagagtcgccagagctaagcataaaaggcgttctcgcaacctatctgt-aagcatctatct |
214 |
Q |
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| T |
37492811 |
gtataagaataaggctcagattcaacaagataaggagattagaatcgccagggctaagcataaaaagctctctcgcaacctatctgtaaaacatctatct |
37492910 |
T |
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| Q |
215 |
att |
217 |
Q |
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||| |
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| T |
37492911 |
att |
37492913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 37473074 - 37473213
Alignment:
| Q |
16 |
atgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgatttac |
115 |
Q |
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|||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| || | ||| |||| |
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| T |
37473074 |
atgaatgggaatcgaaacgcgttgaagatcttgagatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgctttat |
37473173 |
T |
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| Q |
116 |
gtataagaataaggcttttattaaaaaagataaggagatt |
155 |
Q |
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| T |
37473174 |
ttacaagaataaggcccagattcaaaaagataaggagatt |
37473213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 37481790 - 37481929
Alignment:
| Q |
16 |
atgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgatttac |
115 |
Q |
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|||||||||||| ||||||| | ||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||| || | ||| |||| |
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| T |
37481790 |
atgaatgggaatcgaaacgcgtcgaagatcttgatatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgctttat |
37481889 |
T |
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| Q |
116 |
gtataagaataaggcttttattaaaaaagataaggagatt |
155 |
Q |
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| T |
37481890 |
ttacaagaataaggcccagattcaaaaagataaggagatt |
37481929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 37487491 - 37487636
Alignment:
| Q |
20 |
atgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgatttacgtat |
119 |
Q |
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| T |
37487491 |
atgggaatcgaaacgcgttaaagatcttgagattagtgactgctttgtgcatgacgatgacattaagcctcttatatttaaatgtgatcgcttcgagtat |
37487590 |
T |
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| Q |
120 |
aagaataaggcttttattaaaaaagataaggagattagagtcgcca |
165 |
Q |
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| T |
37487591 |
aggaataaggcacagattcaaaaagataaggagattaaagtcgcca |
37487636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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