View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17796_low_42 (Length: 230)

Name: NF17796_low_42
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17796_low_42
NF17796_low_42
[»] chr8 (16 HSPs)
chr8 (20-207)||(19403304-19403494)
chr8 (20-125)||(19459375-19459480)
chr8 (20-125)||(19557053-19557158)
chr8 (157-203)||(19375312-19375358)
chr8 (17-125)||(19471015-19471118)
chr8 (17-125)||(19541939-19542042)
chr8 (17-125)||(19590655-19590758)
chr8 (17-106)||(19409231-19409315)
chr8 (17-106)||(19456250-19456334)
chr8 (17-106)||(19524743-19524827)
chr8 (157-203)||(19409368-19409414)
chr8 (157-203)||(19456387-19456433)
chr8 (157-203)||(19470935-19470981)
chr8 (157-203)||(19524644-19524690)
chr8 (157-203)||(19541859-19541905)
chr8 (157-203)||(19590792-19590838)
[»] chr6 (2 HSPs)
chr6 (157-203)||(7441418-7441464)
chr6 (13-82)||(6796455-6796525)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 19403304 - 19403494
Alignment:
Q  20 aggatcacttgttttgtagattaacttcattgcagacatttggtattcaatttttaaatggatcggaacggggggtcactctacctgggagtgttgtttc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19403304 aggatcacttgttttgtagattaacttcattgcagacatttggtattcgatttttaaatggatcggaacgaggggtcactctacctgggagtgttgtttc 19403403  T
Q  120 cctccttc---tcttctttaatnnnnnnnngcaccgtaattaagggcttaacacttatctggcatgcaacattgtggaagatttggggagc 207  Q
    ||||||||   |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19403404 cctccttctcttcttctttaataaaaaaaagcaccgtaattaagggcttaacacttatctggcatgcaacattgtggaagatttggggagc 19403494  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 19459480 - 19459375
Alignment:
Q  20 aggatcacttgttttgtagat-taacttcattgcagacatttggtattcaatttttaaatggatcggaacggggggtcactctacctgggagtgttgttt 118  Q
    |||||| ||| |||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| || | ||| ||||||| | ||||||||||    
T  19459480 aggatcgcttattttgtagatgtaacttcactgcagacatttgatattcaatttttaaatggatcggaac-ggagatcattctacctagaagtgttgttt 19459382  T
Q  119 ccctcct 125  Q
    |||||||    
T  19459381 ccctcct 19459375  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 19557158 - 19557053
Alignment:
Q  20 aggatcacttgttttgtagat-taacttcattgcagacatttggtattcaatttttaaatggatcggaacggggggtcactctacctgggagtgttgttt 118  Q
    |||||| ||| |||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| || | ||| ||||||| | ||||||||||    
T  19557158 aggatcgcttattttgtagatgtaacttcactgcagacatttgatattcaatttttaaatggatcggaac-ggagatcattctacctagaagtgttgttt 19557060  T
Q  119 ccctcct 125  Q
    |||||||    
T  19557059 ccctcct 19557053  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 19375312 - 19375358
Alignment:
Q  157 taagggcttaacacttatctggcatgcaacattgtggaagatttggg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19375312 taagggcttaacacttatctggcatgcaacattgtggaagatttggg 19375358  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 19471118 - 19471015
Alignment:
Q  17 tgaaggatcacttgttttgtagat-taacttcattgcagacatttggtattcaatttttaaatggatcggaacggggggtcactctacctgggagtgttg 115  Q
    |||||||||||||| ||||||||  ||||||| |||||||     |||||||| |||||||||||||| |||| |||||||| ||||||||| | |||||    
T  19471118 tgaaggatcacttgctttgtagacgtaacttcgttgcaga-----ggtattcattttttaaatggatcagaac-gggggtcattctacctggaaatgttg 19471025  T
Q  116 tttccctcct 125  Q
    ||||||||||    
T  19471024 tttccctcct 19471015  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 19542042 - 19541939
Alignment:
Q  17 tgaaggatcacttgttttgtagat-taacttcattgcagacatttggtattcaatttttaaatggatcggaacggggggtcactctacctgggagtgttg 115  Q
    |||||||||||||| ||||||||  ||||||| |||||||     |||||||| |||||||||||||| |||| |||||||| ||||||||| | |||||    
T  19542042 tgaaggatcacttgctttgtagacgtaacttcgttgcaga-----ggtattcattttttaaatggatcagaac-gggggtcattctacctggaaatgttg 19541949  T
Q  116 tttccctcct 125  Q
    ||||||||||    
T  19541948 tttccctcct 19541939  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 19590655 - 19590758
Alignment:
Q  17 tgaaggatcacttgttttgtagat-taacttcattgcagacatttggtattcaatttttaaatggatcggaacggggggtcactctacctgggagtgttg 115  Q
    |||||||||||||| ||||||||  ||||||| |||||||     |||||||| |||||||||||||| |||| |||||||| ||||||||| | |||||    
T  19590655 tgaaggatcacttgctttgtagacgtaacttcgttgcaga-----ggtattcattttttaaatggatcagaac-gggggtcattctacctggaaatgttg 19590748  T
Q  116 tttccctcct 125  Q
    ||||||||||    
T  19590749 tttccctcct 19590758  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 19409231 - 19409315
Alignment:
Q  17 tgaaggatcacttgttttgtagat-taacttcattgcagacatttggtattcaatttttaaatggatcggaacggggggtcactctacctg 106  Q
    |||||||||||||||||||||||  ||||||| |||||||     |||||||  ||||||||||||||||||| |||||||| ||||||||    
T  19409231 tgaaggatcacttgttttgtagaagtaacttcgttgcaga-----ggtattcgttttttaaatggatcggaac-gggggtcattctacctg 19409315  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 19456250 - 19456334
Alignment:
Q  17 tgaaggatcacttgttttgtagat-taacttcattgcagacatttggtattcaatttttaaatggatcggaacggggggtcactctacctg 106  Q
    |||||||||||||||||||||||  ||||||| |||||||     |||||||  ||||||||||||||||||| |||||||| ||||||||    
T  19456250 tgaaggatcacttgttttgtagaagtaacttcgttgcaga-----ggtattcgttttttaaatggatcggaac-gggggtcattctacctg 19456334  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 19524827 - 19524743
Alignment:
Q  17 tgaaggatcacttgttttgtagat-taacttcattgcagacatttggtattcaatttttaaatggatcggaacggggggtcactctacctg 106  Q
    |||||||||||||||||||||||  ||||||| |||||||     |||||||  |||||||||||||||||||| ||||||| ||||||||    
T  19524827 tgaaggatcacttgttttgtagaagtaacttcgttgcaga-----ggtattcgttttttaaatggatcggaacg-ggggtcattctacctg 19524743  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 19409368 - 19409414
Alignment:
Q  157 taagggcttaacacttatctggcatgcaacattgtggaagatttggg 203  Q
    |||||||||||||||||||  |||||||| |||||||| ||||||||    
T  19409368 taagggcttaacacttatccagcatgcaatattgtggatgatttggg 19409414  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 19456387 - 19456433
Alignment:
Q  157 taagggcttaacacttatctggcatgcaacattgtggaagatttggg 203  Q
    |||||||||||||||||||  |||||||| |||||||| ||||||||    
T  19456387 taagggcttaacacttatccagcatgcaatattgtggatgatttggg 19456433  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 19470981 - 19470935
Alignment:
Q  157 taagggcttaacacttatctggcatgcaacattgtggaagatttggg 203  Q
    |||||||||||||||||||  |||||||| |||||||| ||||||||    
T  19470981 taagggcttaacacttatccagcatgcaatattgtggatgatttggg 19470935  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 19524690 - 19524644
Alignment:
Q  157 taagggcttaacacttatctggcatgcaacattgtggaagatttggg 203  Q
    |||||||||||||||||||  |||||||| |||||||| ||||||||    
T  19524690 taagggcttaacacttatccagcatgcaatattgtggatgatttggg 19524644  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 19541905 - 19541859
Alignment:
Q  157 taagggcttaacacttatctggcatgcaacattgtggaagatttggg 203  Q
    |||||||||||||||||||  |||||||| |||||||| ||||||||    
T  19541905 taagggcttaacacttatccagcatgcaatattgtggatgatttggg 19541859  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 19590792 - 19590838
Alignment:
Q  157 taagggcttaacacttatctggcatgcaacattgtggaagatttggg 203  Q
    |||||||||||||||||||  |||||||| |||||||| ||||||||    
T  19590792 taagggcttaacacttatccagcatgcaatattgtggatgatttggg 19590838  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 7441418 - 7441464
Alignment:
Q  157 taagggcttaacacttatctggcatgcaacattgtggaagatttggg 203  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  7441418 taagggcttaacacttatgtggcatgcaacattgtggaagatttggg 7441464  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 6796525 - 6796455
Alignment:
Q  13 gagatgaaggatcacttgttttgtagat-taacttcattgcagacatttggtattcaatttttaaatggat 82  Q
    |||||| ||||||||||||||||||||| ||||||  |||| || |||||||||||||||| |||||||||    
T  6796525 gagatggaggatcacttgttttgtagatgtaactttgttgcggaaatttggtattcaatttataaatggat 6796455  T

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