View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_44 (Length: 221)
Name: NF17796_low_44
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 1072246 - 1072432
Alignment:
| Q |
16 |
gcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaa |
115 |
Q |
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| T |
1072246 |
gcaaaggtgaagaaacatggaattgtggtgtgaatgatcgttttagaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaa |
1072345 |
T |
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| Q |
116 |
tatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattcaaacttaaatgtgagtgatggtagtgg |
202 |
Q |
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| T |
1072346 |
tatgacacttgagaattgtaagaataaatgcttggaagattgttcttgtatggcttattcaaacttaaatgtgagtgatggtagtgg |
1072432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 1047433 - 1047598
Alignment:
| Q |
16 |
gcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaa |
115 |
Q |
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| T |
1047433 |
gcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaa |
1047532 |
T |
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| Q |
116 |
tatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattcaaactt |
181 |
Q |
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| T |
1047533 |
tatgacacttgagaattgtaaaaataaatgcttggaaaattgttcttgcatggcttattcaaactt |
1047598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 1104462 - 1104631
Alignment:
| Q |
18 |
aaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaata |
117 |
Q |
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| T |
1104462 |
aaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttgggttgatggtaata |
1104561 |
T |
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| Q |
118 |
tgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattcaaacttaaatgt |
187 |
Q |
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| T |
1104562 |
tgacacttgagaattgtaagaacaaatgcttggaaaattgttcttgcatggcttattcaaacttagatgt |
1104631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 1087930 - 1088072
Alignment:
| Q |
39 |
tgtggtgtgaatgatggttttggaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaaga |
138 |
Q |
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| T |
1087930 |
tgtggagtgaatgatagttttgtaagattttatggattgaaattgccagatacatcacatacttgggttgatgcaaatatgacacttgagaattgtaaga |
1088029 |
T |
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| Q |
139 |
ataaatgcttggaagattgttcttgcatggcttattcaaactt |
181 |
Q |
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| T |
1088030 |
ataaatgcttggaagattgttcttgcatggcttattcaaactt |
1088072 |
T |
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