View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_6 (Length: 567)
Name: NF17796_low_6
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Original strand, 11345358 - 11345862
Alignment:
| Q |
9 |
ataattcttcaaagctacctcataaggatcctctaattttattttcaatttctcttgttggcgacttgcaacctcttgagcaagtgtccaatcatagaat |
108 |
Q |
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| T |
11345358 |
ataattcttcaaagctacctcataaggatcctctaattttattttcaatttctcttgttggcgacttgcaacctcttgagcaagtgtccaatcatagaat |
11345457 |
T |
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| Q |
109 |
ctcctactttcttcattgctcagaacagtgtaaacttcttttaatttcatgaatttttctgaggctgtttttagagggagtgaagttgtgtctggatgat |
208 |
Q |
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| T |
11345458 |
ctcctactttcttcattgctcagaacagtgtaaacttcttttaatttcatgaatttttctgaggctgtttttagagggagtgaagttgtgtctggatgat |
11345557 |
T |
|
| Q |
209 |
actcctttgatagtttcctgaatgccattttgattgcttctacatcagcttctggtgatattcctaagaatctgcacaaatattccattattcagtaact |
308 |
Q |
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| T |
11345558 |
actcctttgatagtttcctgaatgccattttgattgcttctacatcagcttctggtgatattcctaagaatctgcacaaatattccattattcagtaact |
11345657 |
T |
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| Q |
309 |
attgtcatttaaataaacaagttttctcatgaaaccaaatctctggcaactagtaagttagcaacttatgcacaagtttttctttataaaaagaaaagaa |
408 |
Q |
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| T |
11345658 |
attgtcatttaaataaacaag-tttctcatgaaaccaaatctctggcaactcataagttagcaacttatgcacaagtttttatttttaaaaagaaaagaa |
11345756 |
T |
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| Q |
409 |
a--atcatgttccctgaagaaaaacataacttaataatagtatcttgactaaacttgagtttaaatgaactt-attctggaaaattcagtttacaatgca |
505 |
Q |
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| ||||||||| | |||||||||| || | |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
11345757 |
attatcatgttctttaaagaaaaacagaattgaataatagtatcttgactaaacttgagtttaaataaacttcattctggaaaattcagtttacaatgca |
11345856 |
T |
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| Q |
506 |
acaaac |
511 |
Q |
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| T |
11345857 |
acaaac |
11345862 |
T |
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