View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17796_low_7 (Length: 547)
Name: NF17796_low_7
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17796_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 33338284 - 33338817
Alignment:
| Q |
1 |
atagttttatatattgtctctgatgtggagttcagtaacaagagtttgagattgcaatctaacaaacaaagttcaaatccctttaaagatgccatacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33338284 |
atagttttatatattgtctctgatgtggagttcagtaacaagagtttgagattgcaatctaacaaacaaagttcaaatccctttaaagatgctatacaaa |
33338383 |
T |
|
| Q |
101 |
gttcaactccccaattttctcaaaattaataattaactatacattcaacttcttgttcnnnnnnnnctatacattcaacttaaacaactaagagatccgc |
200 |
Q |
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| T |
33338384 |
gttcaactccccaattttctcaaaattaataattaactatacattcaacttcttgttcaaaaaaaactatacattcaacttaaacaactaagagatccgc |
33338483 |
T |
|
| Q |
201 |
aagtggacggtgagactagacctttcagattagtcgatccttgagttgagtatcgagttnnnnnnnngaggagatttaaaataattgttatatttcaact |
300 |
Q |
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| T |
33338484 |
aagtggacggtgagactagacctttcagattagtcgatccttgagttaagtatcgagttaaaaaaaagaggagatttaaaataattgttatatttcaact |
33338583 |
T |
|
| Q |
301 |
atcttatattatgttgttttcttcttacatgatattatatgacacaattatatatgatatga-nnnnnnnnnnnngaagagatgatatgatatttattat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33338584 |
atcttatattatgttgttttcttcttacatgatattatatgacacaattatatatgatatgatattattttttttgaagagatgatatgatatttattat |
33338683 |
T |
|
| Q |
400 |
aaacataaataaatttatcgatatatgattaactgaaaatatttaagatgaatattgaaattctaaaaaaggtacgcataattgattcaactcttcaacn |
499 |
Q |
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| T |
33338684 |
aaacataaataaatttatcgatatatgattaactgaaaatatttaagatgaatattgaaattctaaaaaaggtacgcataattgattcaactcttcaaca |
33338783 |
T |
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| Q |
500 |
nnnnnnngtataattgattcaatcagagtattat |
533 |
Q |
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| T |
33338784 |
aaaaaaagtataattgattcaatcagagtattat |
33338817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 390 - 533
Target Start/End: Complemental strand, 35127426 - 35127286
Alignment:
| Q |
390 |
tatttattataaacataaataaatttatcgatatatgattaactgaaaatatttaagatgaatattgaaattctaaaaaaggtacgcataattgattcaa |
489 |
Q |
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|||||||||||||| | | |||||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
35127426 |
tatttattataaacttca-taaatttatcaatatatgagtaactgaaa-tatttaagatgaatatttaaattctaaaaa-ggtacgcataattgattcaa |
35127330 |
T |
|
| Q |
490 |
ctcttcaacnnnnnnnngtataattgattcaatcagagtattat |
533 |
Q |
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| T |
35127329 |
ctcttcaacaaaaaaaagtataattgattcaatcaaagtattat |
35127286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35127795 - 35127704
Alignment:
| Q |
1 |
atagttttatatattgtctctgatgtggagttcagtaa-caagagtttgagattgcaatct-aacaaacaaagttcaaatccctttaaagat |
90 |
Q |
| |
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|||||||||||| |||||| ||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
35127795 |
atagttttatatcttgtctgtgaggtggagttcagtaaacaagagtttgagattgcaatctaaacaaacaaagttcaaatccaattaaagat |
35127704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 35127500 - 35127429
Alignment:
| Q |
269 |
aggagatttaaaataattgttatatttcaactatcttatattatgttgttttcttcttacatgatattatat |
340 |
Q |
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||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||| |
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| T |
35127500 |
aggagatataaaataattgttatatttcaaccatcttatactatgttgttttctccttacagtatattatat |
35127429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 12275379 - 12275336
Alignment:
| Q |
296 |
caactatcttatattatgttgttttcttcttacatgatattata |
339 |
Q |
| |
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||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
12275379 |
caactatcttataatatgttgttttcttctaacatgatattata |
12275336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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