View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17796_low_9 (Length: 473)

Name: NF17796_low_9
Description: NF17796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17796_low_9
NF17796_low_9
[»] chr1 (5 HSPs)
chr1 (17-462)||(3430455-3430913)
chr1 (20-113)||(3428004-3428097)
chr1 (273-353)||(42795392-42795472)
chr1 (280-328)||(4655720-4655768)
chr1 (275-309)||(15892167-15892201)
[»] chr6 (5 HSPs)
chr6 (223-396)||(8484634-8484808)
chr6 (242-398)||(10324398-10324557)
chr6 (273-323)||(8030826-8030876)
chr6 (278-353)||(32164064-32164139)
chr6 (223-265)||(6507507-6507549)
[»] chr7 (7 HSPs)
chr7 (290-393)||(36016414-36016518)
chr7 (231-353)||(46777290-46777412)
chr7 (273-367)||(41742383-41742478)
chr7 (273-396)||(41467536-41467660)
chr7 (273-325)||(2397867-2397919)
chr7 (273-328)||(24519351-24519406)
chr7 (273-340)||(37720553-37720620)
[»] chr4 (12 HSPs)
chr4 (273-395)||(34360841-34360964)
chr4 (229-395)||(27598187-27598355)
chr4 (273-399)||(55291237-55291364)
chr4 (242-396)||(24355755-24355910)
chr4 (273-398)||(46405495-46405624)
chr4 (274-369)||(34650836-34650933)
chr4 (274-336)||(4687363-4687425)
chr4 (273-311)||(31938217-31938255)
chr4 (274-328)||(34933469-34933523)
chr4 (286-340)||(38509938-38509992)
chr4 (273-365)||(20393923-20394016)
chr4 (280-392)||(30840241-30840354)
[»] chr8 (7 HSPs)
chr8 (223-381)||(32286018-32286177)
chr8 (273-397)||(45197148-45197273)
chr8 (285-353)||(34935129-34935197)
chr8 (273-368)||(7643714-7643809)
chr8 (288-331)||(40737697-40737740)
chr8 (273-365)||(32404622-32404715)
chr8 (273-337)||(8108000-8108064)
[»] chr2 (8 HSPs)
chr2 (288-381)||(37357250-37357344)
chr2 (228-399)||(15354337-15354513)
chr2 (223-381)||(34353247-34353406)
chr2 (228-353)||(15507002-15507127)
chr2 (273-397)||(38204610-38204736)
chr2 (275-340)||(9116405-9116470)
chr2 (273-337)||(6621473-6621537)
chr2 (273-337)||(9521064-9521128)
[»] chr3 (7 HSPs)
chr3 (249-368)||(26141678-26141798)
chr3 (273-353)||(22938500-22938580)
chr3 (273-337)||(50384635-50384699)
chr3 (223-323)||(22938326-22938426)
chr3 (273-338)||(51227421-51227486)
chr3 (299-353)||(3383574-3383628)
chr3 (288-337)||(29247325-29247374)
[»] chr5 (4 HSPs)
chr5 (273-353)||(38353644-38353724)
chr5 (274-336)||(9992553-9992615)
chr5 (274-368)||(15311594-15311685)
chr5 (295-340)||(24233186-24233231)
[»] scaffold0009 (1 HSPs)
scaffold0009 (273-336)||(106490-106553)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 3430913 - 3430455
Alignment:
Q  17 acaatagaatatttccaactcatgaattcttaccactaaaacttgagtaatgaaaaaattgtgtaattcaatgagtaaataatcaaggggatatatgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3430913 acaatagaatatttccaactcatgaattcttaccactaaaacttgagtaatgaaaaaattgtgtaattcaatgagtaaataatca-ggggatatatgagg 3430815  T
Q  117 cttgatggttagggtttgaattaaaaaattgagtgataagacaattaaaggttccatttctactaccaaaataaaactaacaatattgttttata-nnnn 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         
T  3430814 cttgatggttagggtttgaattaaaaaattgagtgataagacaataaaaggttccatttctactaccaaaataaaactaacaatattgttttatattttt 3430715  T
Q  216 nnnaaaaggttttgctaaccgatgctcttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttttatacttttgagaa 315  Q
       |||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||    
T  3430714 tttaaaaggttttgctaaccggtgctcttaggacaatggttaaggaaatcaaaaaaagaaagttttaggttaaaaatatcactttttatacttttgagaa 3430615  T
Q  316 gttgaatgcacaagttccaatgcaagattgctatatttcttccttaaccattgttctgagggcactaattaacatttccctt-------------aatgt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||             |||||    
T  3430614 gttgaatgcacaagttccaatgcaagattgctatatttcttccttaaccattgctctgagggcactggttagcatttcccttttttaaaatagaaaatgt 3430515  T
Q  403 taattgtaatgttagtatttctttcttgtcagactttagactccacaagttaatcccttt 462  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3430514 taattgtaatgttagtatttctttcttgtcagactttaaactccacaagttaatcccttt 3430455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 3428097 - 3428004
Alignment:
Q  20 atagaatatttccaactcatgaattcttaccactaaaacttgagtaatgaaaaaattgtgtaattcaatgagtaaataatcaaggggatatatg 113  Q
    |||||||||||||| || || ||||  ||||||||||||||||||||| | ||||||||||||| |||| |||||||||| |||||||||||||    
T  3428097 atagaatatttccagcttataaatttgtaccactaaaacttgagtaataagaaaattgtgtaatccaataagtaaataattaaggggatatatg 3428004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 42795472 - 42795392
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt 353  Q
    |||| ||||||||| |||| |||| ||||||||||||| | |||||||||| ||||||| ||||| |||||| ||||||||    
T  42795472 gaaaattttaagttgaaaaaatcattttttatacttttaaaaagttgaatgtacaagtttcaatgtaagattactatattt 42795392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 4655768 - 4655720
Alignment:
Q  280 ttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaa 328  Q
    ||||||| |||||||||||||||| |||||| || ||||||||||||||    
T  4655768 ttaagttgaaaatatcactttttaaacttttaaggagttgaatgcacaa 4655720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 15892167 - 15892201
Alignment:
Q  275 aagttttaagttaaaaatatcactttttatacttt 309  Q
    ||||||||| |||||||||||||||||||||||||    
T  15892167 aagttttaaattaaaaatatcactttttatacttt 15892201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 223 - 396
Target Start/End: Original strand, 8484634 - 8484808
Alignment:
Q  223 ggttttgctaaccgatgctcttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttttatacttttgagaagttgaat 322  Q
    |||| ||||||||| |||||||||| ||||||||||||||| |       |||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  8484634 ggttatgctaaccggtgctcttagggcaatggttaaggaaaccaaaaaaagaaagttttaggttgagaatatcactttttatacttttgagaagttgaat 8484733  T
Q  323 gcacaagttccaatgcaagattgctatattt-cttccttaaccattgttctgagggcactaattaacatttccct 396  Q
    |||||| |||||||  || ||| |||||||| ||||||||||||||| ||||| || |||  ||| |||||||||    
T  8484734 gcacaaattccaattaaaaattactatatttgcttccttaaccattgatctgacggaactggttagcatttccct 8484808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 398
Target Start/End: Complemental strand, 10324557 - 10324398
Alignment:
Q  242 cttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatca--ctttttatacttttgagaagttgaatgcacaagttccaatgca 339  Q
    |||||| ||||||||||||||| |       |||||||||||||| ||||||  |   |||||| ||||||||| ||||||||| |||||||||||||||    
T  10324557 cttagggcaatggttaaggaaaccaaaaaaagaaagttttaagttgaaaatactattttttttagacttttgaggagttgaatgtacaagttccaatgca 10324458  T
Q  340 agattgctatattt-cttccttaaccattgttctgagggcactaattaacatttccctta 398  Q
    | | | |||||||| | ||||||||  ||||  ||||||||||  |||||||||||||||    
T  10324457 atactactatatttgcatccttaactgttgtcatgagggcactggttaacatttccctta 10324398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 8030826 - 8030876
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatg 323  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  8030826 gaaagttttaagttgaaaatagcactttttaaacttttgagaagttgaatg 8030876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 32164064 - 32164139
Alignment:
Q  278 ttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt 353  Q
    ||||||||| |||||||||||||||| | ||||||  | |||| || |||||||||||||  ||||| ||||||||    
T  32164064 ttttaagttgaaaatatcactttttaaatttttgaagaattgactgtacaagttccaatgttagattactatattt 32164139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 6507549 - 6507507
Alignment:
Q  223 ggttttgctaaccgatgctcttaggacaatggttaaggaaatc 265  Q
    |||||||||||||| ||| || |||||||||||||||||||||    
T  6507549 ggttttgctaaccggtgccctcaggacaatggttaaggaaatc 6507507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 36016518 - 36016414
Alignment:
Q  290 aatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaaccattgttctgagggcactaattaac 388  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||||| |||||||||||  |||||    
T  36016518 aatatcactttttatacttttgagaagttgaatgcacaagttccgatgcaatattactatatttgcttccttaaccattgtcctgagggcactggttaac 36016419  T
Q  389 atttc 393  Q
    |||||    
T  36016418 atttc 36016414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 231 - 353
Target Start/End: Complemental strand, 46777412 - 46777290
Alignment:
Q  231 taaccgatgctcttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagt 330  Q
    |||||| ||| |||||| ||||||||||||||| |       |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  46777412 taaccggtgcccttagggcaatggttaaggaaaccaaaaagagaaagttttatgttgaaaatatcactttttatgcttttgagaagttgaatgcacaagt 46777313  T
Q  331 tccaatgcaagattgctatattt 353  Q
    |||||||||||||| || |||||    
T  46777312 tccaatgcaagattactgtattt 46777290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 41742383 - 41742478
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaaccatt 367  Q
    ||||||||| |||| |||||||||||||||| | |||||||||||||||||||||||||||| |||||| || |||||||| ||| ||||||||||    
T  41742383 gaaagtttttagttgaaaatatcactttttagatttttgagaagttgaatgcacaagttccactgcaagcttactatatttactttcttaaccatt 41742478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 396
Target Start/End: Original strand, 41467536 - 41467660
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaaccattgttc 371  Q
    |||| ||||||||| |||||| || |||||| |||||||||||||||||||||||||||  ||| |  |||| ||||||||  || ||||||||||| ||    
T  41467536 gaaaattttaagttgaaaataccattttttagacttttgagaagttgaatgcacaagttttaatacgggattactatatttgttttcttaaccattgctc 41467635  T
Q  372 tgagggcactaattaacatttccct 396  Q
    |||||||||| |||| |||||||||    
T  41467636 tgagggcactgattagcatttccct 41467660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 2397867 - 2397919
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgca 325  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  2397867 gaaagttttaagttcaaaataccactttttagacttttgagaagttgaatgca 2397919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 24519406 - 24519351
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaa 328  Q
    |||| |||||||||||||||| ||||||||| | |||||||||||||| |||||||    
T  24519406 gaaaattttaagttaaaaataacactttttagatttttgagaagttgattgcacaa 24519351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 37720553 - 37720620
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaa 340  Q
    |||||||||||  | |||||| |||||||||| |||||||| ||||||  ||||| ||||||||||||    
T  37720553 gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgacagcacatgttccaatgcaa 37720620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 34360964 - 34360841
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaaccattgttc 371  Q
    |||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||| |||| | ||||| |||||||| |||||||||||||||  |    
T  34360964 gaaagttttaagttgaaaataccactttttagacttttgaggagttgaatgcacaagtttcaatacgagattactatatttgcttccttaaccattgccc 34360865  T
Q  372 tgagggcactaattaacatttccc 395  Q
    |||||||||| |||||||||||||    
T  34360864 tgagggcactgattaacatttccc 34360841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 229 - 395
Target Start/End: Original strand, 27598187 - 27598355
Alignment:
Q  229 gctaaccgatgctcttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatca-ctttttatacttttgagaagttgaatgcaca 327  Q
    |||||||| |||  |||||| ||||||||||||||||       ||||||||||| || |||||| || ||||||| |||||||||||||||||||||||    
T  27598187 gctaaccggtgcctttaggataatggttaaggaaatcaaaaaaagaaagttttaacttgaaaataccaactttttagacttttgagaagttgaatgcaca 27598286  T
Q  328 agttccaatgcaagattgctatattt-cttccttaaccattgttctgagggcactaattaacatttccc 395  Q
    ||||||||||||||||| |||||||| ||||  |||||||||  || |||||||| |||| ||||||||    
T  27598287 agttccaatgcaagattactatatttgcttctctaaccattgccctaagggcactgattagcatttccc 27598355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 55291364 - 55291237
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaaccattgttc 371  Q
    |||||||||| ||| ||||||||| |||||||| |||||||||||| |||||||||||| |||||||| ||| |||||||| ||||||||| |||||  |    
T  55291364 gaaagttttaggttgaaaatatcattttttatatttttgagaagtttaatgcacaagtttcaatgcaaaattactatatttgcttccttaatcattgccc 55291265  T
Q  372 tgagggcactaattaacatttcccttaa 399  Q
    ||||||||||  ||||||||||||||||    
T  55291264 tgagggcactggttaacatttcccttaa 55291237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 242 - 396
Target Start/End: Original strand, 24355755 - 24355910
Alignment:
Q  242 cttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaag 341  Q
    |||||| ||||||||||||||| |       |||||||||||||| ||||||  | |||||| ||||||||| |||||||||||||||||||||||| |     
T  24355755 cttagggcaatggttaaggaaaccaaaaagagaaagttttaagttgaaaatacaattttttagacttttgaggagttgaatgcacaagttccaatgcgat 24355854  T
Q  342 attgctatattt-cttccttaaccattgttctgagggcactaattaacatttccct 396  Q
    ||| |||||||| ||||||||||||||||  ||||| ||||  ||| |||||||||    
T  24355855 attactatatttgcttccttaaccattgtcttgaggacactggttagcatttccct 24355910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 273 - 398
Target Start/End: Original strand, 46405495 - 46405624
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagat---tgctatattt-cttccttaaccattg 368  Q
    |||| ||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||   |||||||||   |||||||||| |||||||||||||||    
T  46405495 gaaaattttaggttgaaaatatcactttttatacttttgaaaagctgaatgcacaagttttgatgcaagattactgctatatttgcttccttaaccattg 46405594  T
Q  369 ttctgagggcactaattaacatttccctta 398  Q
      |||||||||||  ||| |||||||||||    
T  46405595 ccctgagggcactggttagcatttccctta 46405624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 34650836 - 34650933
Alignment:
Q  274 aaagttttaagttaaaaata-tcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaaccattgt 369  Q
    ||||||||||||| |||||| ||| |||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||| |||| |||||||||||    
T  34650836 aaagttttaagttgaaaatactcattttttaaacttttgaggagttgaatgcacaaattccaatgcaaaattactatatttgcttctttaaccattgt 34650933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 4687363 - 4687425
Alignment:
Q  274 aaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaat 336  Q
    ||||||||||  |||||||| |||||||||| |||||||||||||||  |||||| |||||||    
T  4687363 aaagttttaaagtaaaaataacactttttatgcttttgagaagttgatagcacaaattccaat 4687425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 31938255 - 31938217
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttg 311  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  31938255 gaaagttttaaattaaaaatgtcactttttatacttttg 31938217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 34933469 - 34933523
Alignment:
Q  274 aaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaa 328  Q
    ||||||||||||||||||||  |||||||| | ||||||| |||||| |||||||    
T  34933469 aaagttttaagttaaaaataatactttttagatttttgaggagttgattgcacaa 34933523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 38509992 - 38509938
Alignment:
Q  286 taaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaa 340  Q
    |||||||| ||||||| ||||||||||| ||||||   |||||||||||||||||    
T  38509992 taaaaataacacttttcatacttttgaggagttgacaacacaagttccaatgcaa 38509938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 20394016 - 20393923
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaacca 365  Q
    ||||||||||| ||||||  || |||||||| |||||| |  |||||| |||||||||||||||  || |||  ||||||| ||||||||||||    
T  20394016 gaaagttttaaattaaaataattactttttaaacttttaatgagttgactgcacaagttccaatataatattattatatttgcttccttaacca 20393923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 392
Target Start/End: Complemental strand, 30840354 - 30840241
Alignment:
Q  280 ttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaaccattgttctgagggc 378  Q
    ||||||| |||||||||||| |||||||||| |||| || ||| | ||| || |||| ||| |||  |||||||  || ||||||||||| ||||||  |    
T  30840354 ttaagttgaaaatatcacttcttatacttttaagaaattaaatacgcaaatttcaatacaaaattattatatttgttttcttaaccattgctctgagaac 30840255  T
Q  379 actaattaacattt 392  Q
    |||| |||||||||    
T  30840254 actagttaacattt 30840241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 381
Target Start/End: Complemental strand, 32286177 - 32286018
Alignment:
Q  223 ggttttgctaaccgatgctcttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttttatacttttgagaagttgaat 322  Q
    |||| ||||||| | ||| |||||| |||||||||| |||| |       |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  32286177 ggttatgctaactggtgcccttagggcaatggttaaagaaaccaaaaaaagaaagttttaggttgaaaatatcactttttatacttttgagaagttgaat 32286078  T
Q  323 gcacaagttccaatgcaagattgctatattt-cttccttaaccattgttctgagggcact 381  Q
    |||||||||||||||||| | |  ||||||| ||||||||| |||||| ||||| |||||    
T  32286077 gcacaagttccaatgcaaaaatattatatttgcttccttaatcattgtcctgagagcact 32286018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 397
Target Start/End: Original strand, 45197148 - 45197273
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatat-ttcttccttaaccattgttc 371  Q
    |||||||||||||| ||||||| | |||||| |||||||| |||||||||||||||||| |||||| |||||  ||||| | |||||||||| ||||  |    
T  45197148 gaaagttttaagttgaaaatattaatttttaaacttttgaaaagttgaatgcacaagtttcaatgcgagattattatatctgcttccttaactattgccc 45197247  T
Q  372 tgagggcactaattaacatttccctt 397  Q
    | |||| |||  ||| ||||||||||    
T  45197248 taagggtactggttagcatttccctt 45197273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 34935129 - 34935197
Alignment:
Q  285 ttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt 353  Q
    ||||||||||||||||||| | ||||||  ||||||||||||||||||||||||||||||  |||||||    
T  34935129 ttaaaaatatcactttttaaatttttgaagagttgaatgcacaagttccaatgcaagattattatattt 34935197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 7643714 - 7643809
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctata-tttcttccttaaccattg 368  Q
    |||||||||| ||| |||| ||||| ||||| ||||||||| ||||||||||||||||| |||| ||| ||| ||||| |||||| |||||||||||    
T  7643714 gaaagttttatgttgaaaa-atcaccttttaaacttttgaggagttgaatgcacaagtttcaatacaaaattactatattttctttcttaaccattg 7643809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 40737697 - 40737740
Alignment:
Q  288 aaaatatcactttttatacttttgagaagttgaatgcacaagtt 331  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  40737697 aaaatatcactttttatacttttgagaagttgaatgcactagtt 40737740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 365
Target Start/End: Original strand, 32404622 - 32404715
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaacca 365  Q
    |||||||||||||| |||||| || |||||| ||||||||| |||||| ||||||| || |||| ||    |||||||||| ||||||||||||    
T  32404622 gaaagttttaagttgaaaataacattttttaaacttttgaggagttgactgcacaactttcaatacagtgctgctatatttgcttccttaacca 32404715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 8108064 - 8108000
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatg 337  Q
    |||| |||||| |||||||| |||| |||||||||||| |||  ||||||||| ||||| |||||    
T  8108064 gaaaattttaaattaaaaatgtcacattttatacttttaagaccttgaatgcataagtttcaatg 8108000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 288 - 381
Target Start/End: Complemental strand, 37357344 - 37357250
Alignment:
Q  288 aaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt-cttccttaaccattgttctgagggcact 381  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| ||||  ||||| |||||    
T  37357344 aaaatatcactttttatacttttgagaagttgaatgcacaagtttcaatgcaagattactatatttgcttccttaactattgccctgagagcact 37357250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 228 - 399
Target Start/End: Original strand, 15354337 - 15354513
Alignment:
Q  228 tgctaaccgatgctcttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttt-----tatacttttgagaagttgaat 322  Q
    |||||||||||| | ||||| ||||||||||||||| |       |||||||||| ||| ||||||||| ||||     |||||||||||||||||||||    
T  15354337 tgctaaccgatgtttttagggcaatggttaaggaaa-ctaaaaaagaaagttttaggttgaaaatatcatttttttttttatacttttgagaagttgaat 15354435  T
Q  323 gcacaagttccaatgcaagattgctatattt-cttccttaaccattgttctgagggcactaattaacatttcccttaa 399  Q
    ||||||||||||||| || ||| |||||||| |||| |||| ||||| |||||| |||||| ||| ||||||||||||    
T  15354436 gcacaagttccaatgtaaaattactatatttacttcattaatcattgctctgagagcactagttagcatttcccttaa 15354513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 381
Target Start/End: Complemental strand, 34353406 - 34353247
Alignment:
Q  223 ggttttgctaaccgatgctcttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttttatacttttgagaagttgaat 322  Q
    |||| ||||||||| |||  ||||| ||||||||||||||| |       |||| ||||||||| |||||| ||||||||| ||||||||| ||||||||    
T  34353406 ggttatgctaaccggtgcctttagggcaatggttaaggaaaccaaaaaaagaaaattttaagttgaaaataccactttttaaacttttgaggagttgaat 34353307  T
Q  323 gcacaagttccaatgcaagattgctatattt-cttccttaaccattgttctgagggcact 381  Q
    ||||||||| |||||||| ||| ||||||||  |||||||||||||   |||||||||||    
T  34353306 gcacaagtttcaatgcaaaattactatatttggttccttaaccatttccctgagggcact 34353247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 353
Target Start/End: Original strand, 15507002 - 15507127
Alignment:
Q  228 tgctaaccgatgctcttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcaca 327  Q
    |||||||||||||| ||||| ||||||||||| |||         |||||||||||||| |||||| ||||||||| | |||| || |||| ||||||||    
T  15507002 tgctaaccgatgcttttagggcaatggttaagaaaactaaaaaaagaaagttttaagtttaaaataccactttttagatttttaaggagttaaatgcaca 15507101  T
Q  328 agttccaatgcaagattgctatattt 353  Q
    ||||| ||||||| |||  |||||||    
T  15507102 agttctaatgcaaaattattatattt 15507127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 397
Target Start/End: Complemental strand, 38204736 - 38204610
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt--cttccttaaccattgtt 370  Q
    ||||||||| | |||||||| ||||||||||||||||| |||  ||||||||||||||| ||||| || ||| ||| ||||   ||||||||||| || |    
T  38204736 gaaagttttgaattaaaaatgtcactttttatacttttaagattttgaatgcacaagtttcaatgtaacattactacatttagtttccttaaccagtgct 38204637  T
Q  371 ctgagggcactaattaacatttccctt 397  Q
    | | || ||| | ||||||||||||||    
T  38204636 ccggggacacgagttaacatttccctt 38204610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 9116405 - 9116470
Alignment:
Q  275 aagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaa 340  Q
    |||||||||  ||||| || |||||| ||||||||| | |||||||  ||||||||||||||||||    
T  9116405 aagttttaaaataaaagtaacactttgtatacttttcaaaagttgacagcacaagttccaatgcaa 9116470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 6621473 - 6621537
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatg 337  Q
    ||||||||||  |||||||| ||||| |||||| |||| |||  ||||||||||||||| |||||    
T  6621473 gaaagttttatattaaaaatgtcactctttatatttttaagactttgaatgcacaagtttcaatg 6621537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 9521064 - 9521128
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatg 337  Q
    |||||||||||  ||||| || |||||||||||||||| | |||||||  ||||||||| |||||    
T  9521064 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaagtttcaatg 9521128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 368
Target Start/End: Original strand, 26141678 - 26141798
Alignment:
Q  249 caatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgcta 348  Q
    |||||||||||||||||       |||||||| ||||| |||||| || |||||| | ||||||| |||||||||||||||||||||||||||||| |||    
T  26141678 caatggttaaggaaatcaaaaaaagaaagtttaaagttgaaaataccattttttagatttttgaggagttgaatgcacaagttccaatgcaagattacta 26141777  T
Q  349 tattt-cttccttaaccattg 368  Q
    ||||| |||||||||||||||    
T  26141778 tatttgcttccttaaccattg 26141798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 273 - 353
Target Start/End: Original strand, 22938500 - 22938580
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt 353  Q
    |||||||||||||| |||||| ||| ||||| ||||||||||||||||||| ||||||||| |||| ||||| ||||||||    
T  22938500 gaaagttttaagttgaaaataccaccttttagacttttgagaagttgaatgtacaagttcccatgcgagattactatattt 22938580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 50384635 - 50384699
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatg 337  Q
    ||||||||||| |||||||| ||||||||||||||||| |||  |||||||||||||||||||||    
T  50384635 gaaagttttaaattaaaaatgtcactttttatacttttaagaccttgaatgcacaagttccaatg 50384699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 22938326 - 22938426
Alignment:
Q  223 ggttttgctaaccgatgctcttaggacaatggttaaggaaatcnnnnnnngaaagttttaagttaaaaatatcactttttatacttttgagaagttgaat 322  Q
    |||| ||||||| | ||| |||| |||||||||||| ||| ||       |||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  22938326 ggttatgctaactggtgcccttatgacaatggttaaagaattcagaaaaagaaagttttaagttgaaaataccaccttttagacttttgagaagttgaat 22938425  T
Q  323 g 323  Q
    |    
T  22938426 g 22938426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 51227486 - 51227421
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgc 338  Q
    ||||||||||||||||||||| ||||||||| | ||||||| |||| | ||  |||||||||||||    
T  51227486 gaaagttttaagttaaaaataacactttttagatttttgaggagttaattgttcaagttccaatgc 51227421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 3383628 - 3383574
Alignment:
Q  299 ttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt 353  Q
    ||||| ||||||||| |||||||||||||||||||||| | |||||  |||||||    
T  3383628 ttttagacttttgaggagttgaatgcacaagttccaatacgagattattatattt 3383574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 29247374 - 29247325
Alignment:
Q  288 aaaatatcactttttatacttttgagaagttgaatgcacaagttccaatg 337  Q
    |||||| ||||||||||||||||||| ||||||   ||||||||||||||    
T  29247374 aaaataacactttttatacttttgaggagttgataacacaagttccaatg 29247325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 353
Target Start/End: Original strand, 38353644 - 38353724
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctatattt 353  Q
    |||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  38353644 gaaagttttaagttgaaaataccactttttagacttttgaggagttgaatgcacaagttccaatgcgagattactatattt 38353724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 9992553 - 9992615
Alignment:
Q  274 aaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaat 336  Q
    ||||||||||||| |||||| ||||||||| ||||||||  ||||| ||||||||||||||||    
T  9992553 aaagttttaagttgaaaataccactttttaaacttttgaagagttggatgcacaagttccaat 9992615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 368
Target Start/End: Original strand, 15311594 - 15311685
Alignment:
Q  274 aaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaatgcaagattgctata-tttcttccttaaccattg 368  Q
    ||||||||||||| |||||| || |||||| | ||||   |||||||||||||||||||| |||| ||||| ||||| ||  ||||||||||||||    
T  15311594 aaagttttaagttgaaaatacca-tttttaaattttt---aagttgaatgcacaagttcctatgcgagattactatacttgattccttaaccattg 15311685  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 24233231 - 24233186
Alignment:
Q  295 cactttttatacttttgagaagttgaatgcacaagttccaatgcaa 340  Q
    ||||||||||| |||||| |||||||  ||||||||||||||||||    
T  24233231 cactttttatatttttgaaaagttgacagcacaagttccaatgcaa 24233186  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 106490 - 106553
Alignment:
Q  273 gaaagttttaagttaaaaatatcactttttatacttttgagaagttgaatgcacaagttccaat 336  Q
    |||||||||||  | |||||| |||||||||| |||| ||||||||||  ||||||||||||||    
T  106490 gaaagttttaaagtgaaaataacactttttatgctttcgagaagttgatagcacaagttccaat 106553  T

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