View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_high_10 (Length: 411)
Name: NF17797_high_10
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 2778037 - 2777655
Alignment:
| Q |
15 |
agaacctgtgcagaatacgaaaaaagtagttagaatcagtttgaaggtaagaaaacgatttgaattgaaaaatactcggaggaggagtgaaagtgatatt |
114 |
Q |
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| T |
2778037 |
agaacctgtgcacaatacgaaaaaagtagttagaatcagtttgaaggtaagaaaacgatttgaattgaaaaatactcggaggaggagtgaaagtgatatc |
2777938 |
T |
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| Q |
115 |
gattgagattaagaagataaaagagaattgaagtgtaattaataacgcaaaattgagaatagagaaaacctgatctttatccagtttggcgggggatgcc |
214 |
Q |
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| T |
2777937 |
gattgagattaagaagataaaagagaattgaagtgtaattaataacgcaaaattgagaatagagaaaacctgatctttatccagtttggcgggggatgcc |
2777838 |
T |
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| Q |
215 |
atggtcgttggtgaagaagactgagggagaggacggacccaaaatggggatgggtgatgtattaaaatattaatggattttgatnnnnnnnnnnnnnngt |
314 |
Q |
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| T |
2777837 |
atggtcgttggtgaagaagactgagggagaggaaggacccaaaatggggatgggtgatgtattaaaatattaatggattttgataaaaataaaaaaaagt |
2777738 |
T |
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| Q |
315 |
taataatgattaataaattgttataaagttcatcagtataatgtatattatatataaggtcgggttcaaacctcgaccaccac |
397 |
Q |
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| T |
2777737 |
taataatgattaataaattgttataaagttcgtcaggataatgtatattatatataaggtcgggttcaaacctcgaccaccac |
2777655 |
T |
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