View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_high_13 (Length: 387)
Name: NF17797_high_13
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 1519226 - 1518914
Alignment:
| Q |
19 |
cttactgcatgcagttttgaagtatgtccttttctttcnnnnnnncttgacaaagtgtcttttaatagatatatagataattgcattgcatctatccata |
118 |
Q |
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| T |
1519226 |
cttactgcatgcagttttgaagtatgtccttttctttctttttttcttgacaaagtgtcttttaatagatatatagataattgcattgcatctatccata |
1519127 |
T |
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| Q |
119 |
atgtcnnnnnnnnnnnnnnnctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatgnnnnnnnnnnnnngtaatctttatagg |
218 |
Q |
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| T |
1519126 |
atgtctgtgtgtgtgtgtgtctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatgtttttgcttttttgtaatctttatagg |
1519027 |
T |
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| Q |
219 |
ttatgtaatcctctaacatacatagttcttttctattaaggcatggatatggaaagtggccagatatttttgatgataaggatctgaatatgttttctgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1519026 |
ttatgtaatcctctaacatacatagttcttttctattaaggcatggatatggaaagtggccagatattgttgatgataaggatctgaatatgttttctgt |
1518927 |
T |
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| Q |
319 |
atgtcatttggtg |
331 |
Q |
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| T |
1518926 |
atgtcatttggtg |
1518914 |
T |
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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 2910852 - 2910768
Alignment:
| Q |
221 |
atgtaatcctctaacatacatagttcttttctattaaggcatggatatggaaagtggccagatatttttgatgataaggatctgaatat |
309 |
Q |
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| T |
2910852 |
atgtaatcctctaa----catagttcttttctattaaggcatggatatggaaagtggcatgatattgttgatgataaggatctgaatat |
2910768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 2910945 - 2910893
Alignment:
| Q |
139 |
ctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatg |
191 |
Q |
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| T |
2910945 |
ctacgtatgtcaccctccattttatttcattcaatgaaaaacgattttgcatg |
2910893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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